RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CNDP2Q96KP4 475 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 NACAP1Q9BZK3 213 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 RASAL2Q9UJF2 1139 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 FAF1Q9UNN5 650 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 CFAP69A5D8W1 941 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 ACSL4O60488 711 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 RNF40O75150 1001 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 IMPDH2P12268 514 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 PPP1R18Q6NYC8 613 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 HOOK2Q96ED9 719 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 TTF2Q9UNY4 1162 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 ZBED4O75132 1171 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 GUCA1CO95843 209 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 HNRNPH2P55795 449 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 TBX4P57082 545 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 PPFIA1Q13136 1202 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 GOLGA1Q92805 767 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 C16orf45Q96MC5 204 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 NUDT16L1Q9BRJ7 211 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 PRDM5Q9NQX1 630 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 GTPBP10A4D1E9 387 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 A6NCN8 305 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SPDYE5A6NIY4 337 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SERPINI2O75830 405 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 MYCLP12524 364 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 MPP3Q13368 585 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 TAF1CQ15572 869 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 TNNI3KQ59H18 835 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 CAGE1Q8TC20 777 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SMC6Q96SB8 1091 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 F5H423 210 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 POTEJP0CG39 1038 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SOX5P35711 763 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 CPLX3Q8WVH0 158 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 AFF4Q9UHB7 1163 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 DOCK7Q96N67 2140 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 MGEA5O60502 916 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 ELF1P32519 619 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 YARSP54577 528 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 MTERF2Q49AM1 385 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 ZC3H12AQ5D1E8 599 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 CFAP157Q5JU67 520 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 FAM180BQ6P0A1 224 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 KIAA1143Q96AT1 154 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SPDL1Q96EA4 605 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SCYL1Q96KG9 808 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 SH3GL2Q99962 352 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 TTLL3Q9Y4R7 772 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 DOCK8Q8NF50 2099 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 KDM1AO60341 852 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 EIF2S2P20042 333 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 EIF4BP23588 611 aaKnown RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 MLH1P40692 756 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 CUL1Q13616 776 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 CUL3Q13618 768 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 CDC37Q16543 378 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 E2F7Q96AV8 911 aa3.97□□□□□ -1.77
SCN1A-221ENST00000641996 CFDP1Q9UEE9 299 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-221ENST00000641996 TEX28O15482 410 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 PHLDB2Q86SQ0 1253 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 RNF10Q8N5U6 811 aaKnown RBP3.96□□□□□ -1.77
SCN1A-221ENST00000641996 PRIMPOLQ96LW4 560 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 TEX12Q9BXU0 123 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 EHMT1Q9H9B1 1298 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 VPS37BQ9H9H4 285 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 STK38LQ9Y2H1 464 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 H3BRB1 525 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 KLHL41O60662 606 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 CCNCP24863 283 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 RPS6KA3P51812 740 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 CSE1LP55060 971 aaKnown RBP3.96□□□□□ -1.77
SCN1A-221ENST00000641996 ITKQ08881 620 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 SLC44A4Q53GD3 710 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 PASD1Q8IV76 773 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 CCDC50Q8IVM0 306 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 YME1L1Q96TA2 773 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 NUF2Q9BZD4 464 aa3.96□□□□□ -1.77
SCN1A-221ENST00000641996 TUT1Q9H6E5 874 aaKnown RBP3.96□□□□□ -1.77
SCN1A-221ENST00000641996 GBP1P32455 592 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 KLC1Q07866 573 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 SPDYE1Q8NFV5 336 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 DDX23Q9BUQ8 820 aaKnown RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 SELENOOQ9BVL4 669 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 TBC1D2Q9BYX2 928 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 HDAC6Q9UBN7 1215 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 STK39Q9UEW8 545 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 R3HDM2Q9Y2K5 976 aaKnown RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 C2CD2Q9Y426 696 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 BFSP1Q12934 665 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF211Q13398 564 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 LPIN2Q92539 896 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 DHX58Q96C10 678 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 LUC7L2Q9Y383 392 aaKnown RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 PRKAB1Q9Y478 270 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 AKR1B15C9JRZ8 316 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-221ENST00000641996 SLC30A9Q6PML9 568 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 SLC7A5P1Q8MH63 180 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 BACH2Q9BYV9 841 aa3.96□□□□□ -1.78
SCN1A-221ENST00000641996 ZWILCHQ9H900 591 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms