RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ZNF274Q96GC6 653 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 SERPINI1Q99574 410 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 EFHD1Q9BUP0 239 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 DBF4Q9UBU7 674 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 ADGRL2O95490 1459 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 GSTA1P08263 222 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 SERPINB4P48594 390 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 PRPF4BQ13523 1007 aaKnown RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 ANKRD35Q8N283 1001 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 ETAA1Q9NY74 926 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 EPS15L1Q9UBC2 864 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 SAMD9Q5K651 1589 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 MAN1A2O60476 641 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 OPHN1O60890 802 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 ACADSP16219 412 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 KLC1Q07866 573 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 PLA2G4DQ86XP0 818 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 KCNK9Q9NPC2 374 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 TMEM51Q9NW97 253 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 CTDP1Q9Y5B0 961 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-220ENST00000641603 SYNMO15061 1565 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 IQCA1LA6NCM1 817 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 USP5P45974 858 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 E2F4Q16254 413 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 RAPGEF4Q8WZA2 1011 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 NAPBQ9H115 298 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 KCNH3Q9ULD8 1083 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 KIAA0586Q9BVV6 1533 aa5.16□□□□□ -1.58
SCN1A-220ENST00000641603 GNAT3A8MTJ3 354 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 TADA3O75528 432 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 HMOX1P09601 288 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 STRN3Q13033 797 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 CYLC2Q14093 348 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-220ENST00000641603 LCMT1Q9UIC8 334 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 ATP6V0A2Q9Y487 856 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 ARHGEF10O15013 1369 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 MINK1Q8N4C8 1332 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-220ENST00000641603 ZBTB43O43298 467 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 KRT9P35527 623 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 KPNB1Q14974 876 aaKnown RBP5.15□□□□□ -1.58
SCN1A-220ENST00000641603 YTHDF3Q7Z739 585 aaKnown RBP5.15□□□□□ -1.58
SCN1A-220ENST00000641603 TERB1Q8NA31 727 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 PBKQ96KB5 322 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 CUEDC2Q9H467 287 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 ZNF202O95125 648 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 LCA5Q86VQ0 697 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 ATP2A3Q93084 1043 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 EPN3Q9H201 632 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 SPTY2D1Q68D10 685 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-220ENST00000641603 CEP85Q6P2H3 762 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 AGGF1Q8N302 714 aaeCLIP5.15□□□□□ -1.58
SCN1A-220ENST00000641603 TMEM87BQ96K49 555 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 KIFC3Q9BVG8 833 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 AHCYL1O43865 530 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 SPATA1Q5VX52 437 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 GGT6Q6P531 493 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 POLR3EQ9NVU0 708 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 NDE1Q9NXR1 346 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 PPIP5K1Q6PFW1 1433 aa5.15□□□□□ -1.58
SCN1A-220ENST00000641603 H7C1D1 291 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 MAGEA1P43355 309 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 CREB3L3Q68CJ9 461 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 SESTD1Q86VW0 696 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 FAM192AQ9GZU8 254 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 SENP1Q9P0U3 644 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 PASKQ96RG2 1323 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 TBC1D8BQ0IIM8 1120 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 SLC44A4Q53GD3 710 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 SYCP2LQ5T4T6 812 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 PRPF38AQ8NAV1 312 aaKnown RBP5.15□□□□□ -1.59
SCN1A-220ENST00000641603 GSDMAQ96QA5 445 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 MMRN2Q9H8L6 949 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 UBE4BO95155 1302 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 SEC24BO95487 1268 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 IFIT1P09914 478 aaKnown RBP5.15□□□□□ -1.59
SCN1A-220ENST00000641603 INF2Q27J81 1249 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 HIBCHQ6NVY1 386 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-220ENST00000641603 C17orf53Q8N3J3 647 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-220ENST00000641603 SGSM3Q96HU1 749 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 DUOX2Q9NRD8 1548 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 HSPA13P48723 471 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 KRR1Q13601 381 aaKnown RBP5.15□□□□□ -1.59
SCN1A-220ENST00000641603 COG1Q8WTW3 980 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 PPANQ9NQ55 473 aaKnown RBP5.15□□□□□ -1.59
SCN1A-220ENST00000641603 NFE2L3Q9Y4A8 694 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 MAPK13O15264 365 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 EIF3HO15372 352 aaKnown RBP eCLIP5.15□□□□□ -1.596e-7■■■■□ 20.9
SCN1A-220ENST00000641603 PER1O15534 1290 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-220ENST00000641603 TRIM68Q6AZZ1 485 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 KIF6Q6ZMV9 814 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 RNF216Q9NWF9 866 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-220ENST00000641603 RTEL1Q9NZ71 1219 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 STAP2Q9UGK3 403 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 PRDM2Q13029 1718 aa5.15□□□□□ -1.59
SCN1A-220ENST00000641603 CACTINQ8WUQ7 758 aaKnown RBP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 DDX21Q9NR30 783 aaKnown RBP eCLIP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 RTEL1-TNFRSF6BF6WH68 1400 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 KCND1Q9NSA2 647 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 AMOTL2Q9Y2J4 779 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 RGL1Q9NZL6 768 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms