RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 USP17L18D6R9N7 530 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 USP17L22D6RA61 530 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 USP17L17D6RBQ6 530 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 USP17L19D6RCP7 530 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 USP17L20D6RJB6 530 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 GLRX3O76003 335 aaKnown RBP18.32■□□□□ 0.52
SYNE2-228ENST00000639659 ATN1P54259 1190 aaPredicted RBP18.32■□□□□ 0.52
SYNE2-228ENST00000639659 USP17L24Q0WX57 530 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 LHX8Q68G74 356 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 METTL16Q86W50 562 aaKnown RBP18.32■□□□□ 0.52
SYNE2-228ENST00000639659 MAGEB6Q8N7X4 407 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 EDC3Q96F86 508 aaKnown RBP18.32■□□□□ 0.52
SYNE2-228ENST00000639659 SENP6Q9GZR1 1112 aaPredicted RBP18.32■□□□□ 0.52
SYNE2-228ENST00000639659 GPR108Q9NPR9 543 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 CNMDO75829 334 aa18.31■□□□□ 0.52
SYNE2-228ENST00000639659 MYCNP04198 464 aaPredicted RBP18.31■□□□□ 0.52
SYNE2-228ENST00000639659 COL6A1P12109 1028 aa18.31■□□□□ 0.52
SYNE2-228ENST00000639659 POLA2Q14181 598 aa18.31■□□□□ 0.52
SYNE2-228ENST00000639659 GPR153Q6NV75 609 aa18.31■□□□□ 0.52
SYNE2-228ENST00000639659 POTEEQ6S8J3 1075 aa18.31■□□□□ 0.52
SYNE2-228ENST00000639659 LBHD1Q9BQE6 289 aaPredicted RBP18.31■□□□□ 0.52
SYNE2-228ENST00000639659 MTMR10Q9NXD2 777 aa18.31■□□□□ 0.52
SYNE2-228ENST00000639659 FLRT1Q9NZU1 646 aa18.31■□□□□ 0.52
SYNE2-228ENST00000639659 DBNLQ9UJU6 430 aaKnown RBP18.31■□□□□ 0.52
SYNE2-228ENST00000639659 STXBP5LQ9Y2K9 1186 aa18.31■□□□□ 0.52
SYNE2-228ENST00000639659 RABGAP1Q9Y3P9 1069 aa18.31■□□□□ 0.52
SYNE2-228ENST00000639659 A0A0C4DFX4 3053 aa18.31■□□□□ 0.52
SYNE2-228ENST00000639659 VCAM1P19320 739 aa18.3■□□□□ 0.52
SYNE2-228ENST00000639659 ATP2B2Q01814 1243 aa18.3■□□□□ 0.52
SYNE2-228ENST00000639659 ABCB5Q2M3G0 1257 aa18.3■□□□□ 0.52
SYNE2-228ENST00000639659 CERKLQ49MI3 558 aaPredicted RBP18.3■□□□□ 0.52
SYNE2-228ENST00000639659 ACER1Q8TDN7 264 aa18.3■□□□□ 0.52
SYNE2-228ENST00000639659 FAM161BQ96MY7 647 aa18.3■□□□□ 0.52
SYNE2-228ENST00000639659 CABP5Q9NP86 173 aa18.3■□□□□ 0.52
SYNE2-228ENST00000639659 SERPINB13Q9UIV8 391 aa18.3■□□□□ 0.52
SYNE2-228ENST00000639659 USP14P54578 494 aa18.29■□□□□ 0.52
SYNE2-228ENST00000639659 ZKSCAN2Q63HK3 967 aa18.29■□□□□ 0.52
SYNE2-228ENST00000639659 BCL11AQ9H165 835 aa18.29■□□□□ 0.52
SYNE2-228ENST00000639659 RPAP3Q9H6T3 665 aaPredicted RBP18.29■□□□□ 0.52
SYNE2-228ENST00000639659 SLC15A5A6NIM6 579 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 MPHOSPH10O00566 681 aaKnown RBP18.28■□□□□ 0.52
SYNE2-228ENST00000639659 PTPREP23469 700 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 CYP2C19P33261 490 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 ATP8B2P98198 1209 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 ANO1Q5XXA6 986 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 CATSPERGQ6ZRH7 1159 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 TTC6Q86TZ1 520 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 ITPRIPQ8IWB1 547 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 FTSJ3Q8IY81 847 aaKnown RBP18.28■□□□□ 0.52
SYNE2-228ENST00000639659 SSH3Q8TE77 659 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 C12orf42Q96LP6 360 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 BTBD7Q9P203 1132 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 PRKAG2Q9UGJ0 569 aa18.28■□□□□ 0.52
SYNE2-228ENST00000639659 DDX20Q9UHI6 824 aaKnown RBP18.28■□□□□ 0.52
SYNE2-228ENST00000639659 NAV1Q8NEY1 1877 aa18.27■□□□□ 0.52
SYNE2-228ENST00000639659 POLR3DP05423 398 aaPredicted RBP18.27■□□□□ 0.52
SYNE2-228ENST00000639659 TATDN1Q6P1N9 297 aa18.27■□□□□ 0.52
SYNE2-228ENST00000639659 SAMD1Q6SPF0 538 aaPredicted RBP18.27■□□□□ 0.52
SYNE2-228ENST00000639659 NPLOC4Q8TAT6 608 aa18.27■□□□□ 0.52
SYNE2-228ENST00000639659 ZNF512BQ96KM6 892 aaPredicted RBP18.27■□□□□ 0.52
SYNE2-228ENST00000639659 KIAA1683Q9H0B3 1180 aa18.27■□□□□ 0.52
SYNE2-228ENST00000639659 ANTXR1Q9H6X2 564 aa18.27■□□□□ 0.52
SYNE2-228ENST00000639659 ATP11BQ9Y2G3 1177 aa18.27■□□□□ 0.52
SYNE2-228ENST00000639659 DNAH12Q6ZR08 3092 aa18.27■□□□□ 0.52
SYNE2-228ENST00000639659 SPDYE16A6NNV3 312 aaPredicted RBP18.26■□□□□ 0.51
SYNE2-228ENST00000639659 MAP3K12Q12852 859 aa18.26■□□□□ 0.51
SYNE2-228ENST00000639659 DPP9Q86TI2 863 aa18.26■□□□□ 0.51
SYNE2-228ENST00000639659 EAF2Q96CJ1 260 aaPredicted RBP18.26■□□□□ 0.51
SYNE2-228ENST00000639659 TANGO6Q9C0B7 1094 aa18.26■□□□□ 0.51
SYNE2-228ENST00000639659 PRDM5Q9NQX1 630 aaPredicted RBP18.26■□□□□ 0.51
SYNE2-228ENST00000639659 RTP1P59025 263 aa18.25■□□□□ 0.51
SYNE2-228ENST00000639659 GRB14Q14449 540 aa18.25■□□□□ 0.51
SYNE2-228ENST00000639659 SEPT2Q15019 361 aa18.25■□□□□ 0.51
SYNE2-228ENST00000639659 GJC2Q5T442 439 aaPredicted RBP18.25■□□□□ 0.51
SYNE2-228ENST00000639659 AACSQ86V21 672 aa18.25■□□□□ 0.51
SYNE2-228ENST00000639659 CERS3Q8IU89 383 aa18.25■□□□□ 0.51
SYNE2-228ENST00000639659 EHD4Q9H223 541 aa18.25■□□□□ 0.51
SYNE2-228ENST00000639659 MSCO60682 206 aa18.24■□□□□ 0.51
SYNE2-228ENST00000639659 SHMT1P34896 483 aa18.24■□□□□ 0.51
SYNE2-228ENST00000639659 PLCD1P51178 756 aa18.24■□□□□ 0.51
SYNE2-228ENST00000639659 PLS1Q14651 629 aa18.24■□□□□ 0.51
SYNE2-228ENST00000639659 TRPV1Q8NER1 839 aa18.24■□□□□ 0.51
SYNE2-228ENST00000639659 LPAR1Q92633 364 aa18.24■□□□□ 0.51
SYNE2-228ENST00000639659 MAGEB6P1A0A0J9YX57 407 aa18.23■□□□□ 0.51
SYNE2-228ENST00000639659 KBTBD13C9JR72 458 aa18.23■□□□□ 0.51
SYNE2-228ENST00000639659 DNM1LO00429 736 aa18.23■□□□□ 0.51
SYNE2-228ENST00000639659 EVX2Q03828 476 aa18.23■□□□□ 0.51
SYNE2-228ENST00000639659 EXOC6BQ9Y2D4 811 aa18.23■□□□□ 0.51
SYNE2-228ENST00000639659 CUL9Q8IWT3 2517 aa18.22■□□□□ 0.51
SYNE2-228ENST00000639659 IGSF3O75054 1194 aa18.22■□□□□ 0.51
SYNE2-228ENST00000639659 ADORA2AP29274 412 aa18.22■□□□□ 0.51
SYNE2-228ENST00000639659 ZNF697Q5TEC3 545 aa18.22■□□□□ 0.51
SYNE2-228ENST00000639659 GUCD1Q96NT3 240 aa18.22■□□□□ 0.51
SYNE2-228ENST00000639659 MOV10L1Q9BXT6 1211 aaKnown RBP18.22■□□□□ 0.51
SYNE2-228ENST00000639659 MCM9Q9NXL9 1143 aa18.22■□□□□ 0.51
SYNE2-228ENST00000639659 NOP58Q9Y2X3 529 aaKnown RBP18.22■□□□□ 0.51
SYNE2-228ENST00000639659 APBB1O00213 710 aa18.21■□□□□ 0.51
SYNE2-228ENST00000639659 HOXC6P09630 235 aa18.21■□□□□ 0.51
SYNE2-228ENST00000639659 CYBAP13498 195 aa18.21■□□□□ 0.51
SYNE2-228ENST00000639659 GUCY1A2P33402 732 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms