RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.74	□□□□□ -0.21
CLN6-223	ENST00000637823	HACL1	Q9UJ83	578 aa		13.74	□□□□□ -0.21
CLN6-223	ENST00000637823	IGKV6D-41	A0A0C4DH26	115 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	PTPDC1	A2A3K4	754 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	JAK2	O60674	1132 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	TOP1	P11387	765 aa	Known RBP	13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	SYT1	P21579	422 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	CDC27	P30260	824 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	ADD1	P35611	737 aa	Known RBP	13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	MAP3K10	Q02779	954 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	TROAP	Q12815	778 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	RASA3	Q14644	834 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	LARP1B	Q659C4	914 aa	Known RBP	13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	RAB11FIP4	Q86YS3	637 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	PNMA1	Q8ND90	353 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	NUP133	Q8WUM0	1156 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	CEP95	Q96GE4	821 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	TMEM47	Q9BQJ4	181 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	MYL10	Q9BUA6	226 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	TMEM39B	Q9GZU3	492 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	ADARB2	Q9NS39	739 aa	Known RBP	13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	RBM28	Q9NW13	759 aa	Known RBP	13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	MTMR4	Q9NYA4	1195 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	SCN4A	P35499	1836 aa		13.73	□□□□□ -0.21
CLN6-223	ENST00000637823	WDR33	Q9C0J8	1336 aa	Known RBP	13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	FAM196B	A6NMK8	535 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	MPHOSPH10	O00566	681 aa	Known RBP	13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	STX6	O43752	255 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	BRD1	O95696	1058 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	IFNAR1	P17181	557 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	RXRA	P19793	462 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	NTRK3	Q16288	839 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	CCDC144CP	Q8IYA2	1237 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	FAM184A	Q8NB25	1140 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	TRPM4	Q8TD43	1214 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	DDX11	Q96FC9	970 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	STX8	Q9UNK0	236 aa		13.72	□□□□□ -0.21
CLN6-223	ENST00000637823	ASTN2	O75129	1339 aa	Predicted RBP	13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	GLTPD2	A6NH11	291 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	TTLL1	O95922	423 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	SLURP2	P0DP57	97 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	KIF5B	P33176	963 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	HIRA	P54198	1017 aa	Predicted RBP	13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	SSRP1	Q08945	709 aa	Known RBP	13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	ABCB5	Q2M3G0	1257 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	ANGEL2	Q5VTE6	544 aa	Known RBP	13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	TMEM179	Q6ZVK1	233 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	CTCFL	Q8NI51	663 aa	Predicted RBP	13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	HOOK2	Q96ED9	719 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	TEPSIN	Q96N21	525 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	DEFB129	Q9H1M3	183 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	KANSL2	Q9H9L4	492 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	CABP5	Q9NP86	173 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	ZDHHC9	Q9Y397	364 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	PPP2R3B	Q9Y5P8	575 aa		13.71	□□□□□ -0.21
CLN6-223	ENST00000637823	ATAD5	Q96QE3	1844 aa		13.71	□□□□□ -0.22
CLN6-223	ENST00000637823	TCHH	Q07283	1943 aa		13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	PITPNM2	Q9BZ72	1349 aa		13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	DTNB	O60941	627 aa		13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	FDPS	P14324	419 aa	Known RBP	13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	GNAQ	P50148	359 aa		13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	PKP1	Q13835	747 aa		13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	GRM4	Q14833	912 aa		13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	RGS22	Q8NE09	1264 aa		13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	TNPO1	Q92973	898 aa	Known RBP	13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	MKL1	Q969V6	931 aa		13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	NYAP2	Q9P242	653 aa		13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	ORC3	Q9UBD5	711 aa	Predicted RBP	13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	CLIP2	Q9UDT6	1046 aa		13.7	□□□□□ -0.22
CLN6-223	ENST00000637823	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.69	□□□□□ -0.22
CLN6-223	ENST00000637823	STK36	Q9NRP7	1315 aa		13.69	□□□□□ -0.22
CLN6-223	ENST00000637823	FMNL1	O95466	1100 aa	Predicted RBP	13.69	□□□□□ -0.22
CLN6-223	ENST00000637823	ZSCAN22	P10073	491 aa	Predicted RBP	13.69	□□□□□ -0.22
CLN6-223	ENST00000637823	CLEC17A	Q6ZS10	378 aa		13.69	□□□□□ -0.22
CLN6-223	ENST00000637823	USP50	Q70EL3	339 aa	Predicted RBP	13.69	□□□□□ -0.22
CLN6-223	ENST00000637823	TRIM22	Q8IYM9	498 aa		13.69	□□□□□ -0.22
CLN6-223	ENST00000637823	WASF1	Q92558	559 aa		13.69	□□□□□ -0.22
CLN6-223	ENST00000637823	WDR90	Q96KV7	1748 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	PRPF3	O43395	683 aa	Known RBP	13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	GUCY1A2	P33402	732 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	RRP1B	Q14684	758 aa	Known RBP	13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	SEPT2	Q15019	361 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	DCAF15	Q66K64	600 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	TMTC3	Q6ZXV5	915 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	MIGA2	Q7L4E1	593 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	NBPF11	Q86T75	865 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	CDAN1	Q8IWY9	1227 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	LZTS2	Q9BRK4	669 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	SLC26A6	Q9BXS9	759 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	GINM1	Q9NU53	330 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	GGA3	Q9NZ52	723 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	MTMR6	Q9Y217	621 aa		13.68	□□□□□ -0.22
CLN6-223	ENST00000637823	VPS37C	A5D8V6	355 aa	Predicted RBP	13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	PALM3	A6NDB9	673 aa	Predicted RBP	13.67	□□□□□ -0.22
CLN6-223	ENST00000637823		H3BQV1	296 aa		13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	GDF11	O95390	407 aa		13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	GH2	P01242	217 aa		13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	EEF2	P13639	858 aa	Known RBP	13.67	□□□□□ -0.22

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