RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PRDM12Q9H4Q4 367 aa18.03■□□□□ 0.48
CLN3-249ENST00000636685 PI4KBQ9UBF8 816 aa18.03■□□□□ 0.48
CLN3-249ENST00000636685 CDK5RAP2Q96SN8 1893 aa18.03■□□□□ 0.48
CLN3-249ENST00000636685 MAP4K4O95819 1239 aaPredicted RBP18.02■□□□□ 0.48
CLN3-249ENST00000636685 TIMM10P62072 90 aa18.02■□□□□ 0.48
CLN3-249ENST00000636685 LRRC41Q15345 812 aa18.02■□□□□ 0.48
CLN3-249ENST00000636685 AKNAD1Q5T1N1 836 aa18.02■□□□□ 0.48
CLN3-249ENST00000636685 C1orf53Q5VUE5 145 aa18.02■□□□□ 0.48
CLN3-249ENST00000636685 USP17L2Q6R6M4 530 aa18.02■□□□□ 0.48
CLN3-249ENST00000636685 SH3RF3Q8TEJ3 882 aaPredicted RBP18.02■□□□□ 0.48
CLN3-249ENST00000636685 NSUN4Q96CB9 384 aaKnown RBP18.02■□□□□ 0.48
CLN3-249ENST00000636685 BTBD7Q9P203 1132 aa18.02■□□□□ 0.48
CLN3-249ENST00000636685 FBXO3Q9UK99 471 aa18.02■□□□□ 0.48
CLN3-249ENST00000636685 ZBTB21Q9ULJ3 1066 aa18.02■□□□□ 0.48
CLN3-249ENST00000636685 TACC3Q9Y6A5 838 aa18.02■□□□□ 0.48
CLN3-249ENST00000636685 IVNS1ABPQ9Y6Y0 642 aa18.02■□□□□ 0.48
CLN3-249ENST00000636685 LDHCP07864 332 aa18.01■□□□□ 0.47
CLN3-249ENST00000636685 CLTBP09497 229 aa18.01■□□□□ 0.47
CLN3-249ENST00000636685 RAG1P15918 1043 aa18.01■□□□□ 0.47
CLN3-249ENST00000636685 FPGSQ05932 587 aa18.01■□□□□ 0.47
CLN3-249ENST00000636685 ZYXQ15942 572 aaKnown RBP18.01■□□□□ 0.47
CLN3-249ENST00000636685 TBC1D9Q6ZT07 1266 aa18.01■□□□□ 0.47
CLN3-249ENST00000636685 IL27Q8NEV9 243 aa18.01■□□□□ 0.47
CLN3-249ENST00000636685 PA2G4Q9UQ80 394 aaKnown RBP18.01■□□□□ 0.47
CLN3-249ENST00000636685 USP17L15C9J2P7 530 aa18■□□□□ 0.47
CLN3-249ENST00000636685 USP17L13C9JLJ4 530 aa18■□□□□ 0.47
CLN3-249ENST00000636685 USP17L11C9JVI0 530 aa18■□□□□ 0.47
CLN3-249ENST00000636685 USP17L18D6R9N7 530 aa18■□□□□ 0.47
CLN3-249ENST00000636685 USP17L22D6RA61 530 aa18■□□□□ 0.47
CLN3-249ENST00000636685 USP17L17D6RBQ6 530 aa18■□□□□ 0.47
CLN3-249ENST00000636685 USP17L19D6RCP7 530 aa18■□□□□ 0.47
CLN3-249ENST00000636685 USP17L20D6RJB6 530 aa18■□□□□ 0.47
CLN3-249ENST00000636685 KIAA0355O15063 1070 aa18■□□□□ 0.47
CLN3-249ENST00000636685 SEPT4O43236 478 aa18■□□□□ 0.47
CLN3-249ENST00000636685 PBX2P40425 430 aa18■□□□□ 0.47
CLN3-249ENST00000636685 IL15P40933 162 aaPredicted RBP18■□□□□ 0.47
CLN3-249ENST00000636685 GSTO1P78417 241 aa18■□□□□ 0.47
CLN3-249ENST00000636685 USP17L24Q0WX57 530 aa18■□□□□ 0.47
CLN3-249ENST00000636685 ADGRE1Q14246 886 aa18■□□□□ 0.47
CLN3-249ENST00000636685 PRAMEF19Q5SWL8 479 aa18■□□□□ 0.47
CLN3-249ENST00000636685 C1QTNF1Q9BXJ1 281 aa18■□□□□ 0.47
CLN3-249ENST00000636685 SYNGAP1Q96PV0 1343 aa17.99■□□□□ 0.47
CLN3-249ENST00000636685 PIEZO1Q92508 2521 aa17.99■□□□□ 0.47
CLN3-249ENST00000636685 PI16Q6UXB8 463 aa17.99■□□□□ 0.47
CLN3-249ENST00000636685 DPP9Q86TI2 863 aa17.99■□□□□ 0.47
CLN3-249ENST00000636685 MRPL50Q8N5N7 158 aaKnown RBP17.99■□□□□ 0.47
CLN3-249ENST00000636685 DHX36Q9H2U1 1008 aaKnown RBP17.99■□□□□ 0.47
CLN3-249ENST00000636685 GINM1Q9NU53 330 aa17.99■□□□□ 0.47
CLN3-249ENST00000636685 FOCADQ5VW36 1801 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 ZNF236Q9UL36 1845 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 GRXCR1A8MXD5 290 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 PQBP1O60828 265 aaKnown RBP17.98■□□□□ 0.47
CLN3-249ENST00000636685 FAM47AQ5JRC9 791 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 OLFML2BQ68BL8 750 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 CATSPERGQ6ZRH7 1159 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 MAPKAPK5Q8IW41 473 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 CRACR2BQ8N4Y2 399 aaPredicted RBP17.98■□□□□ 0.47
CLN3-249ENST00000636685 XAGE2Q96GT9 111 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 C12orf42Q96LP6 360 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 TRIM34Q9BYJ4 488 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 PBX4Q9BYU1 374 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 RAI14Q9P0K7 980 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 HMG20BQ9P0W2 317 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 CHD9Q3L8U1 2897 aa17.98■□□□□ 0.47
CLN3-249ENST00000636685 IGFBP4P22692 258 aa17.97■□□□□ 0.47
CLN3-249ENST00000636685 ADORA2AP29274 412 aa17.97■□□□□ 0.47
CLN3-249ENST00000636685 CCDC129Q6ZRS4 1044 aa17.97■□□□□ 0.47
CLN3-249ENST00000636685 METTL16Q86W50 562 aaKnown RBP17.97■□□□□ 0.47
CLN3-249ENST00000636685 FOXP4Q8IVH2 680 aaPredicted RBP17.97■□□□□ 0.47
CLN3-249ENST00000636685 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.97■□□□□ 0.473e-6■□□□□ 10.1
CLN3-249ENST00000636685 TMEM39AQ9NV64 488 aa17.97■□□□□ 0.47
CLN3-249ENST00000636685 PHF24Q9UPV7 400 aa17.97■□□□□ 0.47
CLN3-249ENST00000636685 ZNFX1Q9P2E3 1918 aaKnown RBP17.96■□□□□ 0.47
CLN3-249ENST00000636685 GH2P01242 217 aa17.96■□□□□ 0.47
CLN3-249ENST00000636685 TGFBRAP1Q8WUH2 860 aa17.96■□□□□ 0.47
CLN3-249ENST00000636685 FEZ1Q99689 392 aa17.96■□□□□ 0.47
CLN3-249ENST00000636685 LRFN3Q9BTN0 628 aa17.96■□□□□ 0.47
CLN3-249ENST00000636685 PALD1Q9ULE6 856 aa17.96■□□□□ 0.47
CLN3-249ENST00000636685 GBF1Q92538 1859 aa17.96■□□□□ 0.47
CLN3-249ENST00000636685 REV3LO60673 3130 aa17.96■□□□□ 0.47
CLN3-249ENST00000636685 A0A1B0GUL7 405 aa17.95■□□□□ 0.46
CLN3-249ENST00000636685 SPDYE16A6NNV3 312 aaPredicted RBP17.95■□□□□ 0.46
CLN3-249ENST00000636685 COBLO75128 1261 aa17.95■□□□□ 0.46
CLN3-249ENST00000636685 LBX2Q6XYB7 198 aa17.95■□□□□ 0.46
CLN3-249ENST00000636685 AATFQ9NY61 560 aaKnown RBP eCLIP17.95■□□□□ 0.46
CLN3-249ENST00000636685 HCN4Q9Y3Q4 1203 aa17.95■□□□□ 0.46
CLN3-249ENST00000636685 ARIH1Q9Y4X5 557 aaPredicted RBP17.95■□□□□ 0.46
CLN3-249ENST00000636685 MUC6Q6W4X9 2439 aa17.95■□□□□ 0.46
CLN3-249ENST00000636685 PTPRCP08575 1304 aa17.95■□□□□ 0.46
CLN3-249ENST00000636685 FLT1P17948 1338 aa17.95■□□□□ 0.46
CLN3-249ENST00000636685 XIRP2A4UGR9 3374 aa17.94■□□□□ 0.46
CLN3-249ENST00000636685 BMP1P13497 986 aa17.94■□□□□ 0.46
CLN3-249ENST00000636685 VCAM1P19320 739 aa17.94■□□□□ 0.46
CLN3-249ENST00000636685 MVPQ14764 893 aaKnown RBP17.94■□□□□ 0.46
CLN3-249ENST00000636685 SPATA5Q8NB90 893 aa17.94■□□□□ 0.46
CLN3-249ENST00000636685 MOV10L1Q9BXT6 1211 aaKnown RBP17.94■□□□□ 0.46
CLN3-249ENST00000636685 EPHX3Q9H6B9 360 aa17.94■□□□□ 0.46
CLN3-249ENST00000636685 SAP30BPQ9UHR5 308 aaKnown RBP17.94■□□□□ 0.46
CLN3-249ENST00000636685 FAAP100Q0VG06 881 aa17.93■□□□□ 0.46
CLN3-249ENST00000636685 C16orf59Q7L2K0 433 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms