RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CEP89Q96ST8 783 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 CNNM2Q9H8M5 875 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 GOPCQ9HD26 462 aa12.4□□□□□ -0.42
CLN3-244ENST00000636147 KRT18P05783 430 aaKnown RBP12.39□□□□□ -0.43
CLN3-244ENST00000636147 ATF3P18847 181 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 CYP7A1P22680 504 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 CXCR5P32302 372 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 KCNJ6P48051 423 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 GUCY2FP51841 1108 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 MUM1L1Q5H9M0 696 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 C8orf74Q6P047 294 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 USP49Q70CQ1 688 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 SYMPKQ92797 1274 aaKnown RBP12.39□□□□□ -0.43
CLN3-244ENST00000636147 ORAI2Q96SN7 254 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 PRDM11Q9NQV5 511 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 FAM170AA1A519 330 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 MORC3Q14149 939 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 CCDC93Q567U6 631 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 RESP18Q5W5W9 173 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 ESR2Q92731 530 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 NEXMIFQ5QGS0 1516 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 UBE2Q2LH0YL09 131 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 CDC27P30260 824 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 SLC7A5Q01650 507 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 CCDC121Q6ZUS5 278 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 ANKLE2Q86XL3 938 aa12.39□□□□□ -0.43
CLN3-244ENST00000636147 A0A087WUV0 522 aaPredicted RBP12.38□□□□□ -0.43
CLN3-244ENST00000636147 MFAP3LO75121 409 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 COPB1P53618 953 aaKnown RBP12.38□□□□□ -0.43
CLN3-244ENST00000636147 C2orf54Q08AI8 447 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 CSGALNACT2Q8N6G5 542 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 SECISBP2LQ93073 1101 aaKnown RBP12.38□□□□□ -0.43
CLN3-244ENST00000636147 VAT1LQ9HCJ6 419 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 DEPDC5O75140 1603 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 VWDEQ8N2E2 1590 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 SLC5A1P13866 664 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 GBP2P32456 591 aaPredicted RBP12.38□□□□□ -0.43
CLN3-244ENST00000636147 PRPF4BQ13523 1007 aaKnown RBP12.38□□□□□ -0.43
CLN3-244ENST00000636147 PTPROQ16827 1216 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 TTC38Q5R3I4 469 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 ILDR1Q86SU0 546 aaPredicted RBP12.38□□□□□ -0.43
CLN3-244ENST00000636147 TADA2BQ86TJ2 420 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 EFCAB13Q8IY85 973 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 TMTC2Q8N394 836 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 SIRT1Q96EB6 747 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 PPANQ9NQ55 473 aaKnown RBP12.38□□□□□ -0.43
CLN3-244ENST00000636147 EXOC1Q9NV70 894 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 DENND2AQ9ULE3 1009 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 GGCXP38435 758 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 GRIN1Q05586 938 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 TYW1BQ6NUM6 668 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 PANX2Q96RD6 677 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 FAM207AQ9NSI2 230 aaPredicted RBP12.38□□□□□ -0.43
CLN3-244ENST00000636147 TCP11L1Q9NUJ3 509 aa12.38□□□□□ -0.43
CLN3-244ENST00000636147 ERCC5P28715 1186 aaPredicted RBP12.37□□□□□ -0.43
CLN3-244ENST00000636147 PPFIA1Q13136 1202 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 AMOTL1Q8IY63 956 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 TRIML1Q8N9V2 468 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 IL17RAQ96F46 866 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 NOC4LQ9BVI4 516 aaKnown RBP12.37□□□□□ -0.43
CLN3-244ENST00000636147 HAUS4Q9H6D7 363 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 SEPT11Q9NVA2 429 aaKnown RBP12.37□□□□□ -0.43
CLN3-244ENST00000636147 TRIM10Q9UDY6 481 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 SMIM23A6NLE4 172 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 BMP15O95972 392 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 B4GALNT4Q76KP1 1039 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 CCDC51Q96ER9 411 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 JPH2Q9BR39 696 aaPredicted RBP12.37□□□□□ -0.43
CLN3-244ENST00000636147 TFR2Q9UP52 801 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 INO80Q9ULG1 1556 aaPredicted RBP12.37□□□□□ -0.43
CLN3-244ENST00000636147 TSPY2A6NKD2 308 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 CYB5R4Q7L1T6 521 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 POTEDQ86YR6 584 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 TUBE1Q9UJT0 475 aa12.37□□□□□ -0.43
CLN3-244ENST00000636147 FXR1P51114 621 aaKnown RBP eCLIP12.36□□□□□ -0.43
CLN3-244ENST00000636147 CCDC40Q4G0X9 1142 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 BEND6Q5SZJ8 279 aaPredicted RBP12.36□□□□□ -0.43
CLN3-244ENST00000636147 FAM169AQ9Y6X4 670 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 RIMBP3CA6NJZ7 1639 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 RIMBP3BA6NNM3 1639 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 RIMBP3Q9UFD9 1639 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 A0A0U1RQJ8 604 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 TLDC2A0PJX2 215 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 NDUFA10O95299 355 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 ITGA6P23229 1130 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 USP5P45974 858 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 PTGDRQ13258 359 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 TRIM14Q14142 442 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 KRT31Q15323 416 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 SOGA3Q5TF21 947 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 C2CD5Q86YS7 1000 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 ZNF654Q8IZM8 581 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 ZSWIM5Q9P217 1185 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 E7EVH7 732 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 PDCLQ13371 301 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 CPLX4Q7Z7G2 160 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 KLHL7Q8IXQ5 586 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 CHP1Q99653 195 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 SENP2Q9HC62 589 aa12.36□□□□□ -0.43
CLN3-244ENST00000636147 STARD3NLO95772 234 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms