RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	TPX2	Q9ULW0	747 aa	Known RBP	5.08	□□□□□ -1.6
CNOT1-223	ENST00000628857	ANGEL1	Q9UNK9	670 aa	Known RBP	5.08	□□□□□ -1.6
CNOT1-223	ENST00000628857	PLAGL2	Q9UPG8	496 aa		5.08	□□□□□ -1.6
CNOT1-223	ENST00000628857	SLC5A6	Q9Y289	635 aa		5.08	□□□□□ -1.6
CNOT1-223	ENST00000628857	PCDHB14	Q9Y5E9	798 aa		5.08	□□□□□ -1.6
CNOT1-223	ENST00000628857	CHURC1-FNTB	B4DL54	471 aa		5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	TNFRSF10C	O14798	259 aa		5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	TLR3	O15455	904 aa	Known RBP	5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	ARHGAP27	Q6ZUM4	889 aa		5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	SPACA3	Q8IXA5	215 aa		5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	TAB3	Q8N5C8	712 aa	Predicted RBP	5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	RNF141	Q8WVD5	230 aa		5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	VWCE	Q96DN2	955 aa		5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	SEC16B	Q96JE7	1060 aa		5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	5.07	□□□□□ -1.6	7e-12	■■■■□ 21.1
CNOT1-223	ENST00000628857	IGSF5	Q9NSI5	407 aa		5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	LMCD1	Q9NZU5	365 aa		5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	ZNRF3	Q9ULT6	936 aa		5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	COL17A1	Q9UMD9	1497 aa	Predicted RBP	5.07	□□□□□ -1.6
CNOT1-223	ENST00000628857	UPK3BL1	B0FP48	263 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	UPK3BL2	E5RIL1	263 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857		E9PSI1	815 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	GRIN3B	O60391	1043 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	TCF3	P15923	654 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	SOX9	P48436	509 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	GP2	P55259	537 aa	Known RBP	5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	CLC	Q05315	142 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	CDH24	Q86UP0	819 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	PLD6	Q8N2A8	252 aa	Known RBP	5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	MFSD4A	Q8N468	514 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	ASPN	Q9BXN1	380 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	PCDHGB7	Q9Y5F8	929 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	CAPN6	Q9Y6Q1	641 aa		5.06	□□□□□ -1.6
CNOT1-223	ENST00000628857	CNTNAP4	Q9C0A0	1308 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	DNAJA2	O60884	412 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	ADAMTS4	O75173	837 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	MCM4	P33991	863 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	PAK2	Q13177	524 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	AOC3	Q16853	763 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	NFXL1	Q6ZNB6	911 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	GK5	Q6ZS86	529 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	FAM181A	Q8N9Y4	354 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	TMEM40	Q8WWA1	233 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	GPRASP2	Q96D09	838 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	ATG4C	Q96DT6	458 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	TM9SF2	Q99805	663 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	PAK6	Q9NQU5	681 aa	Predicted RBP	5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	KCNH3	Q9ULD8	1083 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	ST14	Q9Y5Y6	855 aa		5.05	□□□□□ -1.6
CNOT1-223	ENST00000628857	PITPNM2	Q9BZ72	1349 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	FAM155A	B1AL88	458 aa	Predicted RBP	5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	SRF	P11831	508 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	NME1	P15531	152 aa	Known RBP	5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	RAG1	P15918	1043 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	GBP1	P32455	592 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	RNF4	P78317	190 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	NLRC3	Q7RTR2	1065 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	OR6P1	Q8NGX9	317 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	ENOX1	Q8TC92	643 aa	Known RBP	5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	DPH2	Q9BQC3	489 aa	Predicted RBP	5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	GPR62	Q9BZJ7	368 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	TRIT1	Q9H3H1	467 aa	Known RBP	5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	SEMA3G	Q9NS98	782 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	STRIP2	Q9ULQ0	834 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857		U3KQE9	123 aa		5.04	□□□□□ -1.6
CNOT1-223	ENST00000628857	FUT4	P22083	530 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	TNK2	Q07912	1038 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	ARSH	Q5FYA8	562 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	XP32	Q5T750	250 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	OVOS1	Q6IE37	1185 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	CBLL1	Q75N03	491 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	TMPRSS7	Q7RTY8	843 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	WFDC3	Q8IUB2	231 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	PHACTR4	Q8IZ21	702 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	XAGE3	Q8WTP9	111 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	DHRS1	Q96LJ7	313 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857		Q96M66	194 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	KREMEN1	Q96MU8	473 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	KLHL3	Q9UH77	587 aa		5.03	□□□□□ -1.6
CNOT1-223	ENST00000628857	PRR33	A8MZF0	331 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	UBOX5	O94941	541 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	CD8B	P10966	210 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	TNNI2	P48788	182 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	RBM25	P49756	843 aa	Known RBP	5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	GNL2	Q13823	731 aa	Known RBP	5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	ANGEL2	Q5VTE6	544 aa	Known RBP	5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	C9orf131	Q5VYM1	1079 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	SLC23A3	Q6PIS1	610 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	SPRED2	Q7Z698	418 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	VPS37D	Q86XT2	251 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	C19orf47	Q8N9M1	422 aa	Known RBP	5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	DTWD2	Q8NBA8	298 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	FLCN	Q8NFG4	579 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	BAHD1	Q8TBE0	780 aa	Predicted RBP	5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	HSPA12B	Q96MM6	686 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	FERD3L	Q96RJ6	166 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	KIF2C	Q99661	725 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	CCSER2	Q9H7U1	834 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	GINM1	Q9NU53	330 aa		5.02	□□□□□ -1.61
CNOT1-223	ENST00000628857	GPATCH2	Q9NW75	528 aa		5.02	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms