RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 PIM2Q9P1W9 311 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 KIF3AQ9Y496 699 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 ZMYM6O95789 1325 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 PEX10O60683 326 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 UBE2HP62256 183 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 DLGAP5Q15398 846 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 MYSM1Q5VVJ2 828 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 SERPINB13Q9UIV8 391 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 MAPK8IP1Q9UQF2 711 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 PAPPAQ13219 1627 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 SORBS3O60504 671 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 GH2P01242 217 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 ECE1P42892 770 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 NDUFA8P51970 172 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 CXCL9Q07325 125 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 CCDC73Q6ZRK6 1079 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 PIGSQ96S52 555 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 NUP62CLQ9H1M0 184 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 HOMER2Q9NSB8 354 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 MYH13Q9UKX3 1938 aa12.16□□□□□ -0.46
VPS11-208ENST00000621676 NWD2Q9ULI1 1742 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 KIF23Q02241 960 aaPredicted RBP12.15□□□□□ -0.46
VPS11-208ENST00000621676 NTRK3Q16288 839 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 DALRD3Q5D0E6 543 aaKnown RBP12.15□□□□□ -0.46
VPS11-208ENST00000621676 RCSD1Q6JBY9 416 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 GPIHBP1Q8IV16 184 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 DRC7Q8IY82 874 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 NIM1KQ8IY84 436 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 SHISA4Q96DD7 197 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 IL1R1P14778 569 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 JAG1P78504 1218 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 TROAPQ12815 778 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 KLHL10Q6JEL2 608 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 TYW1BQ6NUM6 668 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 C17orf53Q8N3J3 647 aaPredicted RBP12.15□□□□□ -0.46
VPS11-208ENST00000621676 SMARCC2Q8TAQ2 1214 aa12.15□□□□□ -0.46
VPS11-208ENST00000621676 GLIS2Q9BZE0 524 aaPredicted RBP12.15□□□□□ -0.46
VPS11-208ENST00000621676 ARPP21Q9UBL0 812 aaPredicted RBP12.15□□□□□ -0.46
VPS11-208ENST00000621676 FAM170AA1A519 330 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 VWA3AA6NCI4 1184 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 SPTLC2O15270 562 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 CPXCR1Q8N123 301 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 ZNF408Q9H9D4 720 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 TMEM260Q9NX78 707 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 PKD2L1Q9P0L9 805 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 RTL9Q8NET4 1388 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 SEC23AQ15436 765 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 UBE2SQ16763 222 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 INF2Q27J81 1249 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 AKAP11Q9UKA4 1901 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 TNRC6CQ9HCJ0 1690 aaKnown RBP12.14□□□□□ -0.47
VPS11-208ENST00000621676 GPR75-ASB3A0A0A6YYF3 556 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 PP2D1A8MPX8 630 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 KINO60870 393 aaKnown RBP12.14□□□□□ -0.47
VPS11-208ENST00000621676 MKRN3Q13064 507 aaKnown RBP12.14□□□□□ -0.47
VPS11-208ENST00000621676 LETM2Q2VYF4 491 aa12.14□□□□□ -0.47
VPS11-208ENST00000621676 SEMA3EO15041 775 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 KCNA3P22001 575 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 NAPAP54920 295 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 CCDC93Q567U6 631 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 DACT2Q5SW24 774 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 PODNQ7Z5L7 613 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 TBC1D22AQ8WUA7 517 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 EPSTI1Q96J88 318 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 TSPY26PQ9H489 355 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 CFAP45Q9UL16 551 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 CYTH3O43739 400 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 MARCH6O60337 910 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 CDKL5O76039 1030 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 HLA-DOAP06340 250 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 CERKLQ49MI3 558 aaPredicted RBP12.13□□□□□ -0.47
VPS11-208ENST00000621676 ANO6Q4KMQ2 910 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 FCHSD1Q86WN1 690 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 SCAND2PQ9GZW5 306 aaPredicted RBP12.13□□□□□ -0.47
VPS11-208ENST00000621676 RAD51AP2Q09MP3 1159 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 ALX1Q15699 326 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 ANO1Q5XXA6 986 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 CCDC174Q6PII3 467 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 ACER1Q8TDN7 264 aa12.13□□□□□ -0.47
VPS11-208ENST00000621676 SH3BP5LQ7L8J4 393 aa12.12□□□□□ -0.47
VPS11-208ENST00000621676 DHX58Q96C10 678 aa12.12□□□□□ -0.47
VPS11-208ENST00000621676 FHDC1Q9C0D6 1143 aaPredicted RBP12.12□□□□□ -0.47
VPS11-208ENST00000621676 TAOK3Q9H2K8 898 aa12.12□□□□□ -0.47
VPS11-208ENST00000621676 MYH2Q9UKX2 1941 aa12.12□□□□□ -0.47
VPS11-208ENST00000621676 MBD3O95983 291 aa12.12□□□□□ -0.47
VPS11-208ENST00000621676 TNNI2P48788 182 aa12.12□□□□□ -0.47
VPS11-208ENST00000621676 RRP1BQ14684 758 aaKnown RBP12.12□□□□□ -0.47
VPS11-208ENST00000621676 ZNF396Q96N95 335 aaPredicted RBP12.12□□□□□ -0.47
VPS11-208ENST00000621676 FEZ1Q99689 392 aa12.12□□□□□ -0.47
VPS11-208ENST00000621676 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.12□□□□□ -0.47
VPS11-208ENST00000621676 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.12□□□□□ -0.47
VPS11-208ENST00000621676 FAM198AQ9UFP1 575 aa12.12□□□□□ -0.47
VPS11-208ENST00000621676 USP17L15C9J2P7 530 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 USP17L10C9JJH3 530 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 USP17L13C9JLJ4 530 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 USP17L11C9JVI0 530 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 USP17L18D6R9N7 530 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 USP17L22D6RA61 530 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 USP17L17D6RBQ6 530 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 USP17L19D6RCP7 530 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms