RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 USP14P54578 494 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 PDE4BQ07343 736 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 PPFIA1Q13136 1202 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 TMTC1Q8IUR5 882 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 CCDC87Q9NVE4 849 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 SUFUQ9UMX1 484 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 UBR2Q8IWV8 1755 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 GOLGA6CA6NDK9 693 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 GOLGA8BA8MQT2 603 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 PPFIA3O75145 1194 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 GOLGA6DP0CG33 693 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 MYL6BP14649 208 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 PTPAQ15257 358 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 LONRF3Q496Y0 759 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 FILIP1LQ4L180 1135 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 B4GALNT4Q76KP1 1039 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 NOA1Q8NC60 698 aaKnown RBP12.22□□□□□ -0.45
UPF3A-212ENST00000619079 CABS1Q96KC9 395 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 GOLGA6AQ9NYA3 693 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 MAN1B1Q9UKM7 699 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 ZBTB1Q9Y2K1 713 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 RTCBQ9Y3I0 505 aaKnown RBP12.22□□□□□ -0.45
UPF3A-212ENST00000619079 BMP6P22004 513 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 PLCD1P51178 756 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 IRAK1P51617 712 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 AMPD2Q01433 879 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 AKAP17AQ02040 695 aaKnown RBP12.22□□□□□ -0.45
UPF3A-212ENST00000619079 DDR1Q08345 913 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 POSTNQ15063 836 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 ZNF827Q17R98 1081 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 PRPF38AQ8NAV1 312 aaKnown RBP12.22□□□□□ -0.45
UPF3A-212ENST00000619079 WWC3Q9ULE0 1092 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 RGPD3A6NKT7 1758 aaPredicted RBP12.22□□□□□ -0.45
UPF3A-212ENST00000619079 RGPD4Q7Z3J3 1758 aa12.22□□□□□ -0.45
UPF3A-212ENST00000619079 CDKL5O76039 1030 aa12.21□□□□□ -0.45
UPF3A-212ENST00000619079 HSPD1P10809 573 aaKnown RBP12.21□□□□□ -0.45
UPF3A-212ENST00000619079 CDC27P30260 824 aa12.21□□□□□ -0.45
UPF3A-212ENST00000619079 CKAP4Q07065 602 aaKnown RBP12.21□□□□□ -0.45
UPF3A-212ENST00000619079 RBL2Q08999 1139 aa12.21□□□□□ -0.45
UPF3A-212ENST00000619079 MORC3Q14149 939 aa12.21□□□□□ -0.45
UPF3A-212ENST00000619079 SLC15A2Q16348 729 aa12.21□□□□□ -0.45
UPF3A-212ENST00000619079 TTC39AQ5SRH9 613 aa12.21□□□□□ -0.45
UPF3A-212ENST00000619079 KANK3Q6NY19 840 aa12.21□□□□□ -0.45
UPF3A-212ENST00000619079 DDX46Q7L014 1031 aaKnown RBP12.21□□□□□ -0.45
UPF3A-212ENST00000619079 FOXP4Q8IVH2 680 aaPredicted RBP12.21□□□□□ -0.45
UPF3A-212ENST00000619079 CNTNAP4Q9C0A0 1308 aa12.21□□□□□ -0.45
UPF3A-212ENST00000619079 KLF18A0A0U1RQI7 1052 aa12.21□□□□□ -0.46
UPF3A-212ENST00000619079 SEMA3EO15041 775 aa12.21□□□□□ -0.46
UPF3A-212ENST00000619079 EIF3HO15372 352 aaKnown RBP eCLIP12.21□□□□□ -0.46
UPF3A-212ENST00000619079 KIAA0754O94854 1291 aa12.21□□□□□ -0.46
UPF3A-212ENST00000619079 MDM2Q00987 491 aaPredicted RBP12.21□□□□□ -0.46
UPF3A-212ENST00000619079 FMR1Q06787 632 aaKnown RBP eCLIP12.21□□□□□ -0.46
UPF3A-212ENST00000619079 HSP90AA4PQ58FG1 418 aa12.21□□□□□ -0.46
UPF3A-212ENST00000619079 ZMYM1Q5SVZ6 1142 aa12.21□□□□□ -0.46
UPF3A-212ENST00000619079 KCNV1Q6PIU1 500 aa12.21□□□□□ -0.46
UPF3A-212ENST00000619079 VPS37DQ86XT2 251 aa12.21□□□□□ -0.46
UPF3A-212ENST00000619079 CAPS2Q9BXY5 557 aa12.21□□□□□ -0.46
UPF3A-212ENST00000619079 KAT14Q9H8E8 782 aa12.21□□□□□ -0.46
UPF3A-212ENST00000619079 ITIH6Q6UXX5 1313 aa12.21□□□□□ -0.46
UPF3A-212ENST00000619079 NEXNQ0ZGT2 675 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 INTS5Q6P9B9 1019 aaKnown RBP12.2□□□□□ -0.46
UPF3A-212ENST00000619079 SMIM5Q71RC9 77 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 KRI1Q8N9T8 703 aaKnown RBP12.2□□□□□ -0.46
UPF3A-212ENST00000619079 BCAS4Q8TDM0 211 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 CDC5LQ99459 802 aaKnown RBP12.2□□□□□ -0.46
UPF3A-212ENST00000619079 MAP3K14Q99558 947 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 WDR19Q8NEZ3 1342 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 ZC3H4Q9UPT8 1303 aaKnown RBP12.2□□□□□ -0.46
UPF3A-212ENST00000619079 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.2□□□□□ -0.46
UPF3A-212ENST00000619079 GOLGA6BA6NDN3 693 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 GOLGA8KD6RF30 607 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 C21orf2O43822 256 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 GGCXP38435 758 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 PBX1P40424 430 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 SARSP49591 514 aaKnown RBP12.2□□□□□ -0.46
UPF3A-212ENST00000619079 TRIM14Q14142 442 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 R3HDM1Q15032 1099 aaKnown RBP12.2□□□□□ -0.46
UPF3A-212ENST00000619079 RC3H1Q5TC82 1133 aaKnown RBP12.2□□□□□ -0.46
UPF3A-212ENST00000619079 IQCEQ6IPM2 695 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 CCDC70Q6NSX1 233 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 CPLX2Q6PUV4 134 aaKnown RBP12.2□□□□□ -0.46
UPF3A-212ENST00000619079 CYP26C1Q6V0L0 522 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 AMOTL1Q8IY63 956 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 GIMAP7Q8NHV1 300 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 RUBCNQ92622 972 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 AKT1S1Q96B36 256 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 CLIC6Q96NY7 704 aa12.2□□□□□ -0.46
UPF3A-212ENST00000619079 C5P01031 1676 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 MYCNP04198 464 aaPredicted RBP12.19□□□□□ -0.46
UPF3A-212ENST00000619079 BRD2P25440 801 aaKnown RBP12.19□□□□□ -0.46
UPF3A-212ENST00000619079 RDXP35241 583 aaKnown RBP12.19□□□□□ -0.46
UPF3A-212ENST00000619079 ARHGAP25P42331 645 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 TDO2P48775 406 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 TFCP2Q12800 502 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 NEDD9Q14511 834 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 FBXW10Q5XX13 1052 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 MICALCLQ6ZW33 695 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 CHST3Q7LGC8 479 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 TRAPPC11Q7Z392 1133 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 KLHDC4Q8TBB5 520 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms