RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 PPP1R37O75864 691 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 CDKL5O76039 1030 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 CRKP46108 304 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 NOM1Q5C9Z4 860 aaKnown RBP9.04□□□□□ -0.96
NEK3-207ENST00000617054 PODNQ7Z5L7 613 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 AMOTL1Q8IY63 956 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 GAKO14976 1311 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 FAM205CA6NFA0 338 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 ZNF445P59923 1031 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 DACT2Q5SW24 774 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 MYSM1Q5VVJ2 828 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 GOLPH3LQ9H4A5 285 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 CFAP45Q9UL16 551 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 MRE11P49959 708 aa9.03□□□□□ -0.96
NEK3-207ENST00000617054 TRIM29Q14134 588 aa9.03□□□□□ -0.96
NEK3-207ENST00000617054 LRSAM1Q6UWE0 723 aa9.03□□□□□ -0.96
NEK3-207ENST00000617054 TRIM22Q8IYM9 498 aa9.03□□□□□ -0.96
NEK3-207ENST00000617054 PNMA1Q8ND90 353 aa9.03□□□□□ -0.96
NEK3-207ENST00000617054 TEKT1Q969V4 418 aa9.03□□□□□ -0.96
NEK3-207ENST00000617054 FAM163AQ96GL9 167 aaPredicted RBP9.03□□□□□ -0.96
NEK3-207ENST00000617054 KAT14Q9H8E8 782 aa9.03□□□□□ -0.96
NEK3-207ENST00000617054 PKN1Q16512 942 aa9.03□□□□□ -0.96
NEK3-207ENST00000617054 L1TD1Q5T7N2 865 aaKnown RBP9.03□□□□□ -0.96
NEK3-207ENST00000617054 SLF2Q8IX21 1173 aa9.03□□□□□ -0.96
NEK3-207ENST00000617054 TDRD3Q9H7E2 651 aaKnown RBP9.03□□□□□ -0.96
NEK3-207ENST00000617054 PCDHA7Q9UN72 937 aa9.03□□□□□ -0.96
NEK3-207ENST00000617054 A0A1B0GVL5 298 aa9.02□□□□□ -0.96
NEK3-207ENST00000617054 RAD21O60216 631 aa9.02□□□□□ -0.96
NEK3-207ENST00000617054 FUT2Q10981 343 aa9.02□□□□□ -0.96
NEK3-207ENST00000617054 SF3A1Q15459 793 aaKnown RBP9.02□□□□□ -0.96
NEK3-207ENST00000617054 CSPP1Q1MSJ5 1256 aa9.02□□□□□ -0.96
NEK3-207ENST00000617054 EARS2Q5JPH6 523 aaKnown RBP9.02□□□□□ -0.96
NEK3-207ENST00000617054 SPECC1Q5M775 1068 aa9.02□□□□□ -0.96
NEK3-207ENST00000617054 ZSCAN29Q8IWY8 852 aaPredicted RBP9.02□□□□□ -0.96
NEK3-207ENST00000617054 DIS3L2Q8IYB7 885 aaKnown RBP9.02□□□□□ -0.96
NEK3-207ENST00000617054 CEP95Q96GE4 821 aa9.02□□□□□ -0.96
NEK3-207ENST00000617054 TMEM47Q9BQJ4 181 aa9.02□□□□□ -0.96
NEK3-207ENST00000617054 VAT1LQ9HCJ6 419 aa9.02□□□□□ -0.96
NEK3-207ENST00000617054 MRVI1Q9Y6F6 885 aa9.02□□□□□ -0.96
NEK3-207ENST00000617054 KIAA1551Q9HCM1 1747 aa9.02□□□□□ -0.96
NEK3-207ENST00000617054 PDIA4P13667 645 aaKnown RBP9.02□□□□□ -0.97
NEK3-207ENST00000617054 NASPP49321 788 aaPredicted RBP9.02□□□□□ -0.97
NEK3-207ENST00000617054 ATP2B2Q01814 1243 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 AKAP17AQ02040 695 aaKnown RBP9.02□□□□□ -0.97
NEK3-207ENST00000617054 CCDC183Q5T5S1 534 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 USP17L2Q6R6M4 530 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 CCAR1Q8IX12 1150 aaKnown RBP9.02□□□□□ -0.97
NEK3-207ENST00000617054 LARGE2Q8N3Y3 721 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 GPKOWQ92917 476 aaPredicted RBP eCLIP9.02□□□□□ -0.97
NEK3-207ENST00000617054 PRMT6Q96LA8 375 aaPredicted RBP9.02□□□□□ -0.97
NEK3-207ENST00000617054 RCOR1Q9UKL0 485 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 CCDC196A0A1B0GTZ2 297 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 DDTLA6NHG4 134 aaPredicted RBP9.02□□□□□ -0.97
NEK3-207ENST00000617054 MPHOSPH10O00566 681 aaKnown RBP9.02□□□□□ -0.97
NEK3-207ENST00000617054 AKR1B1P15121 316 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 KIAA2012Q0VF49 1180 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 STK38Q15208 465 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 STRIP1Q5VSL9 837 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 C16orf86Q6ZW13 317 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 LINC00301Q8NCQ3 95 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 CTCFLQ8NI51 663 aaPredicted RBP9.02□□□□□ -0.97
NEK3-207ENST00000617054 ZNF396Q96N95 335 aaPredicted RBP9.02□□□□□ -0.97
NEK3-207ENST00000617054 CLIC6Q96NY7 704 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.02□□□□□ -0.97
NEK3-207ENST00000617054 KDM4CQ9H3R0 1056 aa9.02□□□□□ -0.97
NEK3-207ENST00000617054 CDK5RAP2Q96SN8 1893 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 SHTN1A0MZ66 631 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 CLRN2A0PK11 232 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 DEXIO95424 95 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 PLCG2P16885 1265 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 SLC35G1Q2M3R5 365 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 LRRC47Q8N1G4 583 aaKnown RBP9.01□□□□□ -0.97
NEK3-207ENST00000617054 SYAP1Q96A49 352 aaPredicted RBP9.01□□□□□ -0.97
NEK3-207ENST00000617054 CABP5Q9NP86 173 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 MAST2Q6P0Q8 1798 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 ELP1O95163 1332 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 PSMD14O00487 310 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 MMP1P03956 469 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 TMTC3Q6ZXV5 915 aa9.01□□□□□ -0.97
NEK3-207ENST00000617054 WNT7AO00755 349 aa9□□□□□ -0.97
NEK3-207ENST00000617054 PCP11498 1178 aaKnown RBP9□□□□□ -0.97
NEK3-207ENST00000617054 TOB1P50616 345 aaPredicted RBP9□□□□□ -0.97
NEK3-207ENST00000617054 UBA5Q9GZZ9 404 aa9□□□□□ -0.97
NEK3-207ENST00000617054 OSBPL5Q9H0X9 879 aaPredicted RBP9□□□□□ -0.97
NEK3-207ENST00000617054 MAD2L2Q9UI95 211 aa9□□□□□ -0.97
NEK3-207ENST00000617054 FRMPD2Q68DX3 1309 aaPredicted RBP9□□□□□ -0.97
NEK3-207ENST00000617054 MYH1P12882 1939 aa9□□□□□ -0.97
NEK3-207ENST00000617054 CYTH3O43739 400 aa9□□□□□ -0.97
NEK3-207ENST00000617054 GRIN1Q05586 938 aa9□□□□□ -0.97
NEK3-207ENST00000617054 ANO1Q5XXA6 986 aa9□□□□□ -0.97
NEK3-207ENST00000617054 SH3BP5LQ7L8J4 393 aa9□□□□□ -0.97
NEK3-207ENST00000617054 HOMER1Q86YM7 354 aa9□□□□□ -0.97
NEK3-207ENST00000617054 TSPY26PQ9H489 355 aa9□□□□□ -0.97
NEK3-207ENST00000617054 RTEL1Q9NZ71 1219 aa9□□□□□ -0.97
NEK3-207ENST00000617054 FAM198AQ9UFP1 575 aa9□□□□□ -0.97
NEK3-207ENST00000617054 TCP10L2B9ZVM9 353 aa9□□□□□ -0.97
NEK3-207ENST00000617054 SPTLC2O15270 562 aa9□□□□□ -0.97
NEK3-207ENST00000617054 NDUFA8P51970 172 aa9□□□□□ -0.97
NEK3-207ENST00000617054 CFAP100Q494V2 611 aa9□□□□□ -0.97
NEK3-207ENST00000617054 HHIPL2Q6UWX4 724 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms