RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 EMILIN3Q9NT22 766 aa16.07■□□□□ 0.16
LINC00540-202ENST00000616974 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.07■□□□□ 0.16
LINC00540-202ENST00000616974 NEDD4P46934 1319 aa16.07■□□□□ 0.16
LINC00540-202ENST00000616974 SREBF2Q12772 1141 aa16.07■□□□□ 0.16
LINC00540-202ENST00000616974 POTEEQ6S8J3 1075 aa16.07■□□□□ 0.16
LINC00540-202ENST00000616974 PDHXO00330 501 aa16.06■□□□□ 0.16
LINC00540-202ENST00000616974 ALX1Q15699 326 aa16.06■□□□□ 0.16
LINC00540-202ENST00000616974 MKNK2Q9HBH9 465 aa16.06■□□□□ 0.16
LINC00540-202ENST00000616974 SWAP70Q9UH65 585 aa16.06■□□□□ 0.16
LINC00540-202ENST00000616974 CETPP11597 493 aa16.06■□□□□ 0.16
LINC00540-202ENST00000616974 BACE1P56817 501 aa16.06■□□□□ 0.16
LINC00540-202ENST00000616974 SPICE1Q8N0Z3 855 aa16.06■□□□□ 0.16
LINC00540-202ENST00000616974 ESYT1Q9BSJ8 1104 aa16.06■□□□□ 0.16
LINC00540-202ENST00000616974 BEGAINQ9BUH8 593 aa16.06■□□□□ 0.16
LINC00540-202ENST00000616974 COL11A1P12107 1806 aaPredicted RBP16.05■□□□□ 0.16
LINC00540-202ENST00000616974 HIP1O00291 1037 aa16.05■□□□□ 0.16
LINC00540-202ENST00000616974 ATP2B2Q01814 1243 aa16.05■□□□□ 0.16
LINC00540-202ENST00000616974 RRP12Q5JTH9 1297 aaKnown RBP16.05■□□□□ 0.16
LINC00540-202ENST00000616974 AMOTL1Q8IY63 956 aa16.05■□□□□ 0.16
LINC00540-202ENST00000616974 WDR18Q9BV38 432 aa16.05■□□□□ 0.16
LINC00540-202ENST00000616974 IL17RBQ9NRM6 502 aa16.05■□□□□ 0.16
LINC00540-202ENST00000616974 BAZ2BQ9UIF8 2168 aaKnown RBP16.05■□□□□ 0.16
LINC00540-202ENST00000616974 CXCL11O14625 94 aa16.04■□□□□ 0.16
LINC00540-202ENST00000616974 EEF2P13639 858 aaKnown RBP16.04■□□□□ 0.16
LINC00540-202ENST00000616974 TAF1CQ15572 869 aaPredicted RBP16.04■□□□□ 0.16
LINC00540-202ENST00000616974 CEP95Q96GE4 821 aa16.04■□□□□ 0.16
LINC00540-202ENST00000616974 LSG1Q9H089 658 aaKnown RBP16.04■□□□□ 0.16
LINC00540-202ENST00000616974 USP17L10C9JJH3 530 aa16.04■□□□□ 0.16
LINC00540-202ENST00000616974 ICA1Q05084 483 aa16.04■□□□□ 0.16
LINC00540-202ENST00000616974 ZNF296Q8WUU4 475 aaPredicted RBP16.04■□□□□ 0.16
LINC00540-202ENST00000616974 CABP5Q9NP86 173 aa16.04■□□□□ 0.16
LINC00540-202ENST00000616974 ANAPC4Q9UJX5 808 aa16.04■□□□□ 0.16
LINC00540-202ENST00000616974 MGAMO43451 1857 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 CYP21A2P08686 494 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 CTGFP29279 349 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 TFAP4Q01664 338 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 STOX1Q6ZVD7 989 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 TMEM179Q6ZVK1 233 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 TICAM2Q86XR7 235 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 DSCC1Q9BVC3 393 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 ARHGAP39Q9C0H5 1083 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 TOMM22Q9NS69 142 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 CPA4Q9UI42 421 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 KIAA0100Q14667 2235 aaKnown RBP16.03■□□□□ 0.16
LINC00540-202ENST00000616974 ZMYM6O95789 1325 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 IGKV6D-41A0A0C4DH26 115 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 RANBP6O60518 1105 aaKnown RBP16.03■□□□□ 0.16
LINC00540-202ENST00000616974 FEZ1Q99689 392 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 ZKSCAN3Q9BRR0 538 aa16.03■□□□□ 0.16
LINC00540-202ENST00000616974 RAD50Q92878 1312 aa16.02■□□□□ 0.16
LINC00540-202ENST00000616974 CA12O43570 354 aa16.02■□□□□ 0.16
LINC00540-202ENST00000616974 CTCFP49711 727 aaPredicted RBP16.02■□□□□ 0.16
LINC00540-202ENST00000616974 INHBEP58166 350 aa16.02■□□□□ 0.16
LINC00540-202ENST00000616974 SH3D19Q5HYK7 790 aa16.02■□□□□ 0.16
LINC00540-202ENST00000616974 LRRC47Q8N1G4 583 aaKnown RBP16.02■□□□□ 0.16
LINC00540-202ENST00000616974 NUP88Q99567 741 aaPredicted RBP16.02■□□□□ 0.16
LINC00540-202ENST00000616974 ADGRA2Q96PE1 1338 aa16.02■□□□□ 0.15
LINC00540-202ENST00000616974 FGRP09769 529 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 VCAM1P19320 739 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 ANKRD23Q86SG2 305 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 B4E1Z4 1266 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 GPR25O00155 361 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 RAD21O60216 631 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 AKNAD1Q5T1N1 836 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 MAP4K1Q92918 833 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 ASCC2Q9H1I8 757 aaPredicted RBP16.01■□□□□ 0.15
LINC00540-202ENST00000616974 AS3MTQ9HBK9 375 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 ANO2Q9NQ90 1003 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 SAGE1Q9NXZ1 904 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 AGTPBP1Q9UPW5 1226 aa16.01■□□□□ 0.15
LINC00540-202ENST00000616974 RBM8AQ9Y5S9 174 aaKnown RBP16.01■□□□□ 0.15
LINC00540-202ENST00000616974 CDC45O75419 566 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 TSPY3P0CV98 308 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 TSPY8P0CW00 308 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 PDE4BQ07343 736 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 ZNF444Q8N0Y2 327 aaPredicted RBP16■□□□□ 0.15
LINC00540-202ENST00000616974 CLIP2Q9UDT6 1046 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 GTF3C3Q9Y5Q9 886 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 ZNF213O14771 459 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 MFAP1P55081 439 aaKnown RBP16■□□□□ 0.15
LINC00540-202ENST00000616974 NEDD1Q8NHV4 660 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 STAG1Q8WVM7 1258 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 RUFY2Q8WXA3 655 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 CCDC17Q96LX7 622 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 P2RX7Q99572 595 aaKnown RBP16■□□□□ 0.15
LINC00540-202ENST00000616974 KIAA1683Q9H0B3 1180 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 TXNRD2Q9NNW7 524 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 MTMR4Q9NYA4 1195 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 MTMR7Q9Y216 660 aa16■□□□□ 0.15
LINC00540-202ENST00000616974 TSPY2A6NKD2 308 aa15.99■□□□□ 0.15
LINC00540-202ENST00000616974 ORC4O43929 436 aa15.99■□□□□ 0.15
LINC00540-202ENST00000616974 TLR2O60603 784 aa15.99■□□□□ 0.15
LINC00540-202ENST00000616974 CHST3Q7LGC8 479 aa15.99■□□□□ 0.15
LINC00540-202ENST00000616974 PROCA1Q8NCQ7 364 aaPredicted RBP15.99■□□□□ 0.15
LINC00540-202ENST00000616974 FBXO28Q9NVF7 368 aa15.99■□□□□ 0.15
LINC00540-202ENST00000616974 TMX2Q9Y320 296 aa15.99■□□□□ 0.15
LINC00540-202ENST00000616974 PLIN4Q96Q06 1357 aa15.98■□□□□ 0.15
LINC00540-202ENST00000616974 KDM4AO75164 1064 aa15.98■□□□□ 0.15
LINC00540-202ENST00000616974 SAMD1Q6SPF0 538 aaPredicted RBP15.98■□□□□ 0.15
LINC00540-202ENST00000616974 MFSD6Q6ZSS7 791 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms