RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.98■■□□□ 1.27
CDX1-202ENST00000616154 MAGEB6P1A0A0J9YX57 407 aa22.97■■□□□ 1.27
CDX1-202ENST00000616154 RAB11FIP3O75154 756 aa22.97■■□□□ 1.27
CDX1-202ENST00000616154 PDE6AP16499 860 aa22.97■■□□□ 1.27
CDX1-202ENST00000616154 SHMT1P34896 483 aa22.97■■□□□ 1.27
CDX1-202ENST00000616154 USP14P54578 494 aa22.97■■□□□ 1.27
CDX1-202ENST00000616154 ABCB5Q2M3G0 1257 aa22.97■■□□□ 1.27
CDX1-202ENST00000616154 CLASRPQ8N2M8 674 aaKnown RBP22.97■■□□□ 1.27
CDX1-202ENST00000616154 DIS3LQ8TF46 1054 aaKnown RBP22.97■■□□□ 1.27
CDX1-202ENST00000616154 USP6NLQ92738 828 aa22.97■■□□□ 1.27
CDX1-202ENST00000616154 PAGR1Q9BTK6 254 aa22.97■■□□□ 1.27
CDX1-202ENST00000616154 PORCNQ9H237 461 aa22.97■■□□□ 1.27
CDX1-202ENST00000616154 USP17L15C9J2P7 530 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 USP17L13C9JLJ4 530 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 USP17L11C9JVI0 530 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 USP17L18D6R9N7 530 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 USP17L22D6RA61 530 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 USP17L17D6RBQ6 530 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 USP17L19D6RCP7 530 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 USP17L20D6RJB6 530 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 PLCD1P51178 756 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 USP17L24Q0WX57 530 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 RAB3GAP1Q15042 981 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 SLC9C2Q5TAH2 1124 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 GPR142Q7Z601 462 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 TRMT44Q8IYL2 757 aaKnown RBP22.96■■□□□ 1.27
CDX1-202ENST00000616154 KIAA1683Q9H0B3 1180 aa22.96■■□□□ 1.27
CDX1-202ENST00000616154 MYH8P13535 1937 aa22.95■■□□□ 1.26
CDX1-202ENST00000616154 PRKAR2AP13861 404 aaKnown RBP22.95■■□□□ 1.26
CDX1-202ENST00000616154 GABPAQ06546 454 aa22.95■■□□□ 1.26
CDX1-202ENST00000616154 ZYXQ15942 572 aaKnown RBP22.95■■□□□ 1.26
CDX1-202ENST00000616154 MORN1Q5T089 497 aa22.95■■□□□ 1.26
CDX1-202ENST00000616154 CCAR1Q8IX12 1150 aaKnown RBP22.95■■□□□ 1.26
CDX1-202ENST00000616154 CRNKL1Q9BZJ0 848 aaKnown RBP22.95■■□□□ 1.26
CDX1-202ENST00000616154 CABP5Q9NP86 173 aa22.95■■□□□ 1.26
CDX1-202ENST00000616154 RABGAP1Q9Y3P9 1069 aa22.95■■□□□ 1.26
CDX1-202ENST00000616154 POLR3DP05423 398 aaPredicted RBP22.94■■□□□ 1.26
CDX1-202ENST00000616154 ZKSCAN1P17029 563 aaPredicted RBP22.94■■□□□ 1.26
CDX1-202ENST00000616154 VCAM1P19320 739 aa22.94■■□□□ 1.26
CDX1-202ENST00000616154 RGS2P41220 211 aa22.94■■□□□ 1.26
CDX1-202ENST00000616154 CATSPERGQ6ZRH7 1159 aa22.94■■□□□ 1.26
CDX1-202ENST00000616154 PLEKHH3Q7Z736 793 aa22.94■■□□□ 1.26
CDX1-202ENST00000616154 ACER1Q8TDN7 264 aa22.94■■□□□ 1.26
CDX1-202ENST00000616154 OGDHLQ9ULD0 1010 aa22.94■■□□□ 1.26
CDX1-202ENST00000616154 ZNF532Q9HCE3 1301 aa22.94■■□□□ 1.26
CDX1-202ENST00000616154 GOLIM4O00461 696 aa22.93■■□□□ 1.26
CDX1-202ENST00000616154 CNMDO75829 334 aa22.93■■□□□ 1.26
CDX1-202ENST00000616154 IFIT2P09913 472 aaKnown RBP22.93■■□□□ 1.26
CDX1-202ENST00000616154 MNX1P50219 401 aaPredicted RBP22.93■■□□□ 1.26
CDX1-202ENST00000616154 LBX2Q6XYB7 198 aa22.93■■□□□ 1.26
CDX1-202ENST00000616154 NBPF3Q9H094 633 aa22.93■■□□□ 1.26
CDX1-202ENST00000616154 MYH7P12883 1935 aa22.93■■□□□ 1.26
CDX1-202ENST00000616154 A0A1W2PPC1 479 aa22.92■■□□□ 1.26
CDX1-202ENST00000616154 TCRBV5S4A2TA0A5A2 114 aa22.92■■□□□ 1.26
CDX1-202ENST00000616154 APBB1O00213 710 aa22.92■■□□□ 1.26
CDX1-202ENST00000616154 GUCY1A2P33402 732 aa22.92■■□□□ 1.26
CDX1-202ENST00000616154 CCNA1P78396 465 aa22.92■■□□□ 1.26
CDX1-202ENST00000616154 DNAJC2Q99543 621 aaKnown RBP22.92■■□□□ 1.26
CDX1-202ENST00000616154 APBA2Q99767 749 aa22.92■■□□□ 1.26
CDX1-202ENST00000616154 MCM9Q9NXL9 1143 aa22.92■■□□□ 1.26
CDX1-202ENST00000616154 FRMPD3Q5JV73 1810 aa22.92■■□□□ 1.26
CDX1-202ENST00000616154 RRP1P56182 461 aaKnown RBP22.91■■□□□ 1.26
CDX1-202ENST00000616154 CACNB2Q08289 660 aaPredicted RBP22.91■■□□□ 1.26
CDX1-202ENST00000616154 BAZ2AQ9UIF9 1905 aaKnown RBP22.91■■□□□ 1.26
CDX1-202ENST00000616154 GLRX3O76003 335 aaKnown RBP22.9■■□□□ 1.26
CDX1-202ENST00000616154 SEPT2Q15019 361 aa22.9■■□□□ 1.26
CDX1-202ENST00000616154 LCORLQ8N3X6 602 aa22.9■■□□□ 1.26
CDX1-202ENST00000616154 C11orf49Q9H6J7 331 aa22.9■■□□□ 1.26
CDX1-202ENST00000616154 CWC22Q9HCG8 908 aaKnown RBP22.9■■□□□ 1.26
CDX1-202ENST00000616154 DCP1AQ9NPI6 582 aaPredicted RBP22.9■■□□□ 1.26
CDX1-202ENST00000616154 RLFQ13129 1914 aa22.89■■□□□ 1.26
CDX1-202ENST00000616154 EVX2Q03828 476 aa22.89■■□□□ 1.26
CDX1-202ENST00000616154 MAP2K5Q13163 448 aa22.89■■□□□ 1.26
CDX1-202ENST00000616154 CCL14Q16627 93 aa22.89■■□□□ 1.26
CDX1-202ENST00000616154 SDR42E1Q8WUS8 393 aa22.89■■□□□ 1.26
CDX1-202ENST00000616154 RPAP3Q9H6T3 665 aaPredicted RBP22.89■■□□□ 1.26
CDX1-202ENST00000616154 A0A0G2JMZ2 1700 aa22.89■■□□□ 1.25
CDX1-202ENST00000616154 SPDYE16A6NNV3 312 aaPredicted RBP22.88■■□□□ 1.25
CDX1-202ENST00000616154 C7orf61Q8IZ16 206 aa22.88■■□□□ 1.25
CDX1-202ENST00000616154 EDC3Q96F86 508 aaKnown RBP22.88■■□□□ 1.25
CDX1-202ENST00000616154 PAG1Q9NWQ8 432 aa22.88■■□□□ 1.25
CDX1-202ENST00000616154 BTBD7Q9P203 1132 aa22.88■■□□□ 1.25
CDX1-202ENST00000616154 SLC15A5A6NIM6 579 aa22.87■■□□□ 1.25
CDX1-202ENST00000616154 CCND3P30281 292 aaPredicted RBP22.87■■□□□ 1.25
CDX1-202ENST00000616154 STAP2Q9UGK3 403 aa22.87■■□□□ 1.25
CDX1-202ENST00000616154 SWAP70Q9UH65 585 aa22.87■■□□□ 1.25
CDX1-202ENST00000616154 ZNF236Q9UL36 1845 aa22.87■■□□□ 1.25
CDX1-202ENST00000616154 LAMA3Q16787 3333 aa22.87■■□□□ 1.25
CDX1-202ENST00000616154 A0A1W2PRG0 241 aa22.86■■□□□ 1.25
CDX1-202ENST00000616154 MPHOSPH10O00566 681 aaKnown RBP22.86■■□□□ 1.25
CDX1-202ENST00000616154 CYP2D6P10635 497 aa22.86■■□□□ 1.25
CDX1-202ENST00000616154 ATP5JP18859 108 aa22.86■■□□□ 1.25
CDX1-202ENST00000616154 PTPREP23469 700 aa22.86■■□□□ 1.25
CDX1-202ENST00000616154 ADD2P35612 726 aa22.86■■□□□ 1.25
CDX1-202ENST00000616154 LHX8Q68G74 356 aa22.86■■□□□ 1.25
CDX1-202ENST00000616154 DCTPP1Q9H773 170 aa22.86■■□□□ 1.25
CDX1-202ENST00000616154 ARMT1Q9H993 441 aa22.86■■□□□ 1.25
CDX1-202ENST00000616154 HOXC6P09630 235 aa22.85■■□□□ 1.25
CDX1-202ENST00000616154 GRB14Q14449 540 aa22.85■■□□□ 1.25
CDX1-202ENST00000616154 WDR78Q5VTH9 848 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms