RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 DHX16O60231 1041 aaKnown RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 GADD45BO75293 160 aaPredicted RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 KRT85P78386 507 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 SEC23AQ15436 765 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 KIF4BQ2VIQ3 1234 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 TBC1D10BQ4KMP7 808 aaPredicted RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 IFIT1BQ5T764 474 aaKnown RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 LARP1BQ659C4 914 aaKnown RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 DPY19L2Q6NUT2 758 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 APOA5Q6Q788 366 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 SH3BP5LQ7L8J4 393 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 CRACR2BQ8N4Y2 399 aaPredicted RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 ENAHQ8N8S7 591 aaPredicted RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 CHAMP1Q96JM3 812 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 LLPHQ9BRT6 129 aaKnown RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 TRIM34Q9BYJ4 488 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 SCAND2PQ9GZW5 306 aaPredicted RBP13.6□□□□□ -0.23
VRK3-223ENST00000601341 TCP11L1Q9NUJ3 509 aa13.6□□□□□ -0.23
VRK3-223ENST00000601341 MYH1P12882 1939 aa13.59□□□□□ -0.23
VRK3-223ENST00000601341 DICER1Q9UPY3 1922 aaKnown RBP13.59□□□□□ -0.23
VRK3-223ENST00000601341 DDNO94850 711 aaPredicted RBP13.59□□□□□ -0.23
VRK3-223ENST00000601341 EGFRP00533 1210 aa13.59□□□□□ -0.23
VRK3-223ENST00000601341 TNNI2P48788 182 aa13.59□□□□□ -0.23
VRK3-223ENST00000601341 SCRN1Q12765 414 aa13.59□□□□□ -0.23
VRK3-223ENST00000601341 TNFAIP1Q13829 316 aa13.59□□□□□ -0.23
VRK3-223ENST00000601341 CSRNP1Q96S65 589 aa13.59□□□□□ -0.23
VRK3-223ENST00000601341 SENP2Q9HC62 589 aa13.59□□□□□ -0.23
VRK3-223ENST00000601341 SBF1O95248 1867 aa13.59□□□□□ -0.23
VRK3-223ENST00000601341 ECM29Q5VYK3 1845 aa13.58□□□□□ -0.23
VRK3-223ENST00000601341 ZBTB43O43298 467 aa13.58□□□□□ -0.23
VRK3-223ENST00000601341 LMOD1P29536 600 aaPredicted RBP13.58□□□□□ -0.23
VRK3-223ENST00000601341 RCAN1P53805 252 aa13.58□□□□□ -0.23
VRK3-223ENST00000601341 CCT2P78371 535 aaKnown RBP13.58□□□□□ -0.23
VRK3-223ENST00000601341 METTL16Q86W50 562 aaKnown RBP13.58□□□□□ -0.23
VRK3-223ENST00000601341 DGKHQ86XP1 1220 aa13.58□□□□□ -0.23
VRK3-223ENST00000601341 NEDD1Q8NHV4 660 aa13.58□□□□□ -0.23
VRK3-223ENST00000601341 ZC3H4Q9UPT8 1303 aaKnown RBP13.58□□□□□ -0.24
VRK3-223ENST00000601341 SHMT1P34896 483 aa13.58□□□□□ -0.24
VRK3-223ENST00000601341 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.58□□□□□ -0.24
VRK3-223ENST00000601341 CCDC17Q96LX7 622 aa13.58□□□□□ -0.24
VRK3-223ENST00000601341 GDPD2Q9HCC8 539 aa13.58□□□□□ -0.24
VRK3-223ENST00000601341 HERC5Q9UII4 1024 aaKnown RBP13.58□□□□□ -0.24
VRK3-223ENST00000601341 HPS5Q9UPZ3 1129 aa13.58□□□□□ -0.24
VRK3-223ENST00000601341 ZKSCAN5Q9Y2L8 839 aa13.58□□□□□ -0.24
VRK3-223ENST00000601341 CNTNAP1P78357 1384 aa13.57□□□□□ -0.24
VRK3-223ENST00000601341 NMT2O60551 498 aa13.57□□□□□ -0.24
VRK3-223ENST00000601341 OFD1O75665 1012 aa13.57□□□□□ -0.24
VRK3-223ENST00000601341 EPS15P42566 896 aa13.57□□□□□ -0.24
VRK3-223ENST00000601341 METAP2P50579 478 aaKnown RBP eCLIP13.57□□□□□ -0.24
VRK3-223ENST00000601341 CATIPQ7Z7H3 387 aa13.57□□□□□ -0.24
VRK3-223ENST00000601341 MICU3Q86XE3 530 aa13.57□□□□□ -0.24
VRK3-223ENST00000601341 ANKS1AQ92625 1134 aa13.57□□□□□ -0.24
VRK3-223ENST00000601341 NCOA5Q9HCD5 579 aaKnown RBP13.57□□□□□ -0.24
VRK3-223ENST00000601341 IL17RBQ9NRM6 502 aa13.57□□□□□ -0.24
VRK3-223ENST00000601341 KIF3AQ9Y496 699 aa13.57□□□□□ -0.24
VRK3-223ENST00000601341 CPLX1O14810 134 aa13.56□□□□□ -0.24
VRK3-223ENST00000601341 DNM1Q05193 864 aaKnown RBP13.56□□□□□ -0.24
VRK3-223ENST00000601341 RASA3Q14644 834 aa13.56□□□□□ -0.24
VRK3-223ENST00000601341 PPP2R5BQ15173 497 aa13.56□□□□□ -0.24
VRK3-223ENST00000601341 RCSD1Q6JBY9 416 aa13.56□□□□□ -0.24
VRK3-223ENST00000601341 TATDN1Q6P1N9 297 aa13.56□□□□□ -0.24
VRK3-223ENST00000601341 ZNF654Q8IZM8 581 aa13.56□□□□□ -0.24
VRK3-223ENST00000601341 TMEM39BQ9GZU3 492 aa13.56□□□□□ -0.24
VRK3-223ENST00000601341 ZSCAN16Q9H4T2 348 aaPredicted RBP13.56□□□□□ -0.24
VRK3-223ENST00000601341 DNAJC18Q9H819 358 aa13.56□□□□□ -0.24
VRK3-223ENST00000601341 HACL1Q9UJ83 578 aa13.56□□□□□ -0.24
VRK3-223ENST00000601341 CCDC196A0A1B0GTZ2 297 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 GOLGA8AA7E2F4 631 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 CALM1P0DP23 149 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 CALM2P0DP24 149 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 CALM3P0DP25 149 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 HMGN5P82970 282 aaKnown RBP13.55□□□□□ -0.24
VRK3-223ENST00000601341 PPP4R3BQ5MIZ7 849 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 ATL3Q6DD88 541 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 CPLX2Q6PUV4 134 aaKnown RBP13.55□□□□□ -0.24
VRK3-223ENST00000601341 RAB11FIP4Q86YS3 637 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 RGS22Q8NE09 1264 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 TRPM4Q8TD43 1214 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 PLIN4Q96Q06 1357 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 FUCA2Q9BTY2 467 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 KAT14Q9H8E8 782 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 NID2Q14112 1375 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 VPS37CA5D8V6 355 aaPredicted RBP13.55□□□□□ -0.24
VRK3-223ENST00000601341 FIBPO43427 364 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 TBC1D12O60347 775 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 DDAH1O94760 285 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 AKR1B1P15121 316 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 CERKLQ49MI3 558 aaPredicted RBP13.55□□□□□ -0.24
VRK3-223ENST00000601341 APOBEC3FQ8IUX4 373 aaKnown RBP13.55□□□□□ -0.24
VRK3-223ENST00000601341 NSUN7Q8NE18 718 aaKnown RBP13.55□□□□□ -0.24
VRK3-223ENST00000601341 SMARCC2Q8TAQ2 1214 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 NUP133Q8WUM0 1156 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 L3MBTL3Q96JM7 780 aaPredicted RBP13.55□□□□□ -0.24
VRK3-223ENST00000601341 MYL10Q9BUA6 226 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.55□□□□□ -0.24
VRK3-223ENST00000601341 ADARB2Q9NS39 739 aaKnown RBP13.55□□□□□ -0.24
VRK3-223ENST00000601341 STX8Q9UNK0 236 aa13.55□□□□□ -0.24
VRK3-223ENST00000601341 ASTN2O75129 1339 aaPredicted RBP13.54□□□□□ -0.24
VRK3-223ENST00000601341 FAM196BA6NMK8 535 aa13.54□□□□□ -0.24
VRK3-223ENST00000601341 MPHOSPH10O00566 681 aaKnown RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms