RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 ACER1Q8TDN7 264 aa11.63□□□□□ -0.55
VRK3-215ENST00000599138 CCDC17Q96LX7 622 aa11.63□□□□□ -0.55
VRK3-215ENST00000599138 KIAA1683Q9H0B3 1180 aa11.63□□□□□ -0.55
VRK3-215ENST00000599138 ASCC2Q9H1I8 757 aaPredicted RBP11.63□□□□□ -0.55
VRK3-215ENST00000599138 TMOD4Q9NZQ9 345 aa11.63□□□□□ -0.55
VRK3-215ENST00000599138 ROBO3Q96MS0 1386 aa11.63□□□□□ -0.55
VRK3-215ENST00000599138 FOXP2O15409 715 aa11.62□□□□□ -0.55
VRK3-215ENST00000599138 AKR1B1P15121 316 aa11.62□□□□□ -0.55
VRK3-215ENST00000599138 RGS19P49795 217 aa11.62□□□□□ -0.55
VRK3-215ENST00000599138 KIF22Q14807 665 aa11.62□□□□□ -0.55
VRK3-215ENST00000599138 FAM110CQ1W6H9 321 aa11.62□□□□□ -0.55
VRK3-215ENST00000599138 TMEM179Q6ZVK1 233 aa11.62□□□□□ -0.55
VRK3-215ENST00000599138 SIAH1Q8IUQ4 282 aa11.62□□□□□ -0.55
VRK3-215ENST00000599138 IFNL3Q8IZI9 196 aa11.62□□□□□ -0.55
VRK3-215ENST00000599138 SMCR8Q8TEV9 937 aaPredicted RBP11.62□□□□□ -0.55
VRK3-215ENST00000599138 TRIM47Q96LD4 638 aa11.62□□□□□ -0.55
VRK3-215ENST00000599138 GREB1LQ9C091 1923 aaPredicted RBP11.62□□□□□ -0.55
VRK3-215ENST00000599138 A0A1W2PRG0 241 aa11.61□□□□□ -0.55
VRK3-215ENST00000599138 OSBPP22059 807 aa11.61□□□□□ -0.55
VRK3-215ENST00000599138 PSMC4P43686 418 aa11.61□□□□□ -0.55
VRK3-215ENST00000599138 GCLCP48506 637 aaPredicted RBP11.61□□□□□ -0.55
VRK3-215ENST00000599138 USP14P54578 494 aa11.61□□□□□ -0.55
VRK3-215ENST00000599138 PRMT2P55345 433 aa11.61□□□□□ -0.55
VRK3-215ENST00000599138 ARMC5Q96C12 935 aa11.61□□□□□ -0.55
VRK3-215ENST00000599138 P2RX7Q99572 595 aaKnown RBP11.61□□□□□ -0.55
VRK3-215ENST00000599138 HELLSQ9NRZ9 838 aa11.61□□□□□ -0.55
VRK3-215ENST00000599138 MPHOSPH10O00566 681 aaKnown RBP11.6□□□□□ -0.55
VRK3-215ENST00000599138 PDE4AP27815 886 aa11.6□□□□□ -0.55
VRK3-215ENST00000599138 POTEEQ6S8J3 1075 aa11.6□□□□□ -0.55
VRK3-215ENST00000599138 CCDC129Q6ZRS4 1044 aa11.6□□□□□ -0.55
VRK3-215ENST00000599138 ANKRD13CQ8N6S4 541 aa11.6□□□□□ -0.55
VRK3-215ENST00000599138 FEZ1Q99689 392 aa11.6□□□□□ -0.55
VRK3-215ENST00000599138 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.6□□□□□ -0.55
VRK3-215ENST00000599138 NACAP1Q9BZK3 213 aa11.6□□□□□ -0.55
VRK3-215ENST00000599138 MORF4L1Q9UBU8 362 aa11.6□□□□□ -0.55
VRK3-215ENST00000599138 SRRDQ9UH36 339 aa11.6□□□□□ -0.55
VRK3-215ENST00000599138 PTCH2Q9Y6C5 1203 aa11.6□□□□□ -0.55
VRK3-215ENST00000599138 RLFQ13129 1914 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 A0A0D9SFI3 127 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 MINDY4BA8MYZ0 360 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 USP17L15C9J2P7 530 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 USP17L13C9JLJ4 530 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 USP17L11C9JVI0 530 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 USP17L18D6R9N7 530 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 USP17L22D6RA61 530 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 USP17L17D6RBQ6 530 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 USP17L19D6RCP7 530 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 USP17L20D6RJB6 530 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 FMNL1O95466 1100 aaPredicted RBP11.59□□□□□ -0.55
VRK3-215ENST00000599138 APPP05067 770 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 VCAM1P19320 739 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 RASA1P20936 1047 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 HOXD10P28358 340 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 TDO2P48775 406 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 FCGRTP55899 365 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 HERVK_113P62684 666 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 IRX3P78415 501 aaPredicted RBP11.59□□□□□ -0.55
VRK3-215ENST00000599138 USP17L24Q0WX57 530 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 ALX1Q15699 326 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 MCMDC2Q4G0Z9 681 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 CATSPERGQ6ZRH7 1159 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 FAM227BQ96M60 508 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 TXNRD2Q9NNW7 524 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 RBPJLQ9UBG7 517 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 TMX2Q9Y320 296 aa11.59□□□□□ -0.55
VRK3-215ENST00000599138 TRIM6-TRIM34B2RNG4 842 aa11.58□□□□□ -0.56
VRK3-215ENST00000599138 ICA1Q05084 483 aa11.58□□□□□ -0.56
VRK3-215ENST00000599138 NMIQ13287 307 aaPredicted RBP11.58□□□□□ -0.56
VRK3-215ENST00000599138 ZYXQ15942 572 aaKnown RBP11.58□□□□□ -0.56
VRK3-215ENST00000599138 KIAA1755Q5JYT7 1200 aa11.58□□□□□ -0.56
VRK3-215ENST00000599138 VPS53Q5VIR6 699 aa11.58□□□□□ -0.56
VRK3-215ENST00000599138 LBX2Q6XYB7 198 aa11.58□□□□□ -0.56
VRK3-215ENST00000599138 CLEC10AQ8IUN9 316 aa11.58□□□□□ -0.56
VRK3-215ENST00000599138 GTF3C2Q8WUA4 911 aaPredicted RBP11.58□□□□□ -0.56
VRK3-215ENST00000599138 ZNF333Q96JL9 665 aa11.58□□□□□ -0.56
VRK3-215ENST00000599138 NAPBQ9H115 298 aa11.58□□□□□ -0.56
VRK3-215ENST00000599138 KANSL2Q9H9L4 492 aa11.58□□□□□ -0.56
VRK3-215ENST00000599138 BRCA2P51587 3418 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 CEP290O15078 2479 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 IGKV6D-41A0A0C4DH26 115 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 EEF2P13639 858 aaKnown RBP11.57□□□□□ -0.56
VRK3-215ENST00000599138 SDSP20132 328 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 PRKCZQ05513 592 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 PPARAQ07869 468 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 ZNF589Q86UQ0 364 aaPredicted RBP11.57□□□□□ -0.56
VRK3-215ENST00000599138 LPAR1Q92633 364 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 RILPL2Q969X0 211 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 RPAP3Q9H6T3 665 aaPredicted RBP11.57□□□□□ -0.56
VRK3-215ENST00000599138 SH2D4AQ9H788 454 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 VCPKMTQ9H867 229 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 MKNK2Q9HBH9 465 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 ZNF287Q9HBT7 754 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 ARHGEF10LQ9HCE6 1279 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 ANAPC4Q9UJX5 808 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 MYPNQ86TC9 1320 aa11.57□□□□□ -0.56
VRK3-215ENST00000599138 RBBP6Q7Z6E9 1792 aaKnown RBP11.56□□□□□ -0.56
VRK3-215ENST00000599138 PLIN4Q96Q06 1357 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 TNPO2O14787 897 aaKnown RBP11.56□□□□□ -0.56
VRK3-215ENST00000599138 PEX10O60683 326 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 CNMDO75829 334 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms