RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 ZNFX1Q9P2E3 1918 aaKnown RBP12.89□□□□□ -0.35
VRK3-214ENST00000598553 SALL3Q9BXA9 1300 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 ADCY3O60266 1144 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 INHAP05111 366 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 VCAM1P19320 739 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 IRX3P78415 501 aaPredicted RBP12.88□□□□□ -0.35
VRK3-214ENST00000598553 UBE3CQ15386 1083 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 C12orf42Q96LP6 360 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 SEC62Q99442 399 aaKnown RBP12.88□□□□□ -0.35
VRK3-214ENST00000598553 TMEM106CQ9BVX2 250 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 EPB41L4AQ9HCS5 686 aaPredicted RBP12.88□□□□□ -0.35
VRK3-214ENST00000598553 TMOD4Q9NZQ9 345 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 PCDH10Q9P2E7 1040 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 MORF4L1Q9UBU8 362 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 PNMA3Q9UL41 463 aa12.88□□□□□ -0.35
VRK3-214ENST00000598553 C19orf81C9J6K1 198 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 USP17L12C9JPN9 530 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 USP17L21D6R901 530 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 C12orf60Q5U649 245 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 PRPF38BQ5VTL8 546 aaKnown RBP12.87□□□□□ -0.35
VRK3-214ENST00000598553 TMED8Q6PL24 325 aaPredicted RBP12.87□□□□□ -0.35
VRK3-214ENST00000598553 USP17L2Q6R6M4 530 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 NBPF11Q86T75 865 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 CERS3Q8IU89 383 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 STK11IPQ8N1F8 1099 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 KBTBD3Q8NAB2 608 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 FEZ1Q99689 392 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 PAGR1Q9BTK6 254 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 SLC4A4Q9Y6R1 1079 aa12.87□□□□□ -0.35
VRK3-214ENST00000598553 GSG1L2A8MUP6 293 aa12.86□□□□□ -0.35
VRK3-214ENST00000598553 MPHOSPH10O00566 681 aaKnown RBP12.86□□□□□ -0.35
VRK3-214ENST00000598553 HOXD10P28358 340 aa12.86□□□□□ -0.35
VRK3-214ENST00000598553 GCLCP48506 637 aaPredicted RBP12.86□□□□□ -0.35
VRK3-214ENST00000598553 CTR9Q6PD62 1173 aa12.86□□□□□ -0.35
VRK3-214ENST00000598553 SLAIN1Q8ND83 568 aa12.86□□□□□ -0.35
VRK3-214ENST00000598553 TRIB2Q92519 343 aa12.86□□□□□ -0.35
VRK3-214ENST00000598553 STRBPQ96SI9 672 aaKnown RBP12.86□□□□□ -0.35
VRK3-214ENST00000598553 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.86□□□□□ -0.35
VRK3-214ENST00000598553 KIAA1683Q9H0B3 1180 aa12.86□□□□□ -0.35
VRK3-214ENST00000598553 GINM1Q9NU53 330 aa12.86□□□□□ -0.35
VRK3-214ENST00000598553 BTBD7Q9P203 1132 aa12.86□□□□□ -0.35
VRK3-214ENST00000598553 PLXNA1Q9UIW2 1896 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 SPDYE16A6NNV3 312 aaPredicted RBP12.85□□□□□ -0.35
VRK3-214ENST00000598553 FOXP2O15409 715 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 CYP2B6P20813 491 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 CDK8P49336 464 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 ERVK-9P63128 1117 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 ERVK-24P63145 666 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 IRF5Q13568 498 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 CCL14Q16627 93 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 CATSPERGQ6ZRH7 1159 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 UBE2Q1Q7Z7E8 422 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.85□□□□□ -0.35
VRK3-214ENST00000598553 RNF208Q9H0X6 261 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 RPAP3Q9H6T3 665 aaPredicted RBP12.85□□□□□ -0.35
VRK3-214ENST00000598553 BIN2Q9UBW5 565 aaPredicted RBP12.85□□□□□ -0.35
VRK3-214ENST00000598553 ZNF236Q9UL36 1845 aa12.85□□□□□ -0.35
VRK3-214ENST00000598553 GJA8P48165 433 aa12.84□□□□□ -0.35
VRK3-214ENST00000598553 PABPC4Q13310 644 aaKnown RBP eCLIP12.84□□□□□ -0.35
VRK3-214ENST00000598553 CCDC129Q6ZRS4 1044 aa12.84□□□□□ -0.35
VRK3-214ENST00000598553 C16orf86Q6ZW13 317 aa12.84□□□□□ -0.35
VRK3-214ENST00000598553 U2AF1L4Q8WU68 220 aaKnown RBP12.84□□□□□ -0.35
VRK3-214ENST00000598553 APPBP2Q92624 585 aa12.84□□□□□ -0.35
VRK3-214ENST00000598553 COA7Q96BR5 231 aa12.84□□□□□ -0.35
VRK3-214ENST00000598553 ATP8A2Q9NTI2 1148 aa12.84□□□□□ -0.35
VRK3-214ENST00000598553 RNF113AO15541 343 aaKnown RBP12.83□□□□□ -0.36
VRK3-214ENST00000598553 GPAA1O43292 621 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 GJB1P08034 283 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 GPR142Q7Z601 462 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 SPICE1Q8N0Z3 855 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 GPRC5AQ8NFJ5 357 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 PXYLP1Q8TE99 480 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 DIS3LQ8TF46 1054 aaKnown RBP12.83□□□□□ -0.36
VRK3-214ENST00000598553 USP6NLQ92738 828 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 DEFB118Q96PH6 123 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 CABP5Q9NP86 173 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 PAK6Q9NQU5 681 aaPredicted RBP12.83□□□□□ -0.36
VRK3-214ENST00000598553 FLRT1Q9NZU1 646 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 TACC3Q9Y6A5 838 aa12.83□□□□□ -0.36
VRK3-214ENST00000598553 USP17L15C9J2P7 530 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 USP17L13C9JLJ4 530 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 USP17L11C9JVI0 530 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 USP17L18D6R9N7 530 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 USP17L22D6RA61 530 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 USP17L17D6RBQ6 530 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 USP17L19D6RCP7 530 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 USP17L20D6RJB6 530 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 MNX1P50219 401 aaPredicted RBP12.82□□□□□ -0.36
VRK3-214ENST00000598553 USP17L24Q0WX57 530 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 MORN1Q5T089 497 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 TMEM179Q6ZVK1 233 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 FBXO28Q9NVF7 368 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 SMCHD1A6NHR9 2005 aa12.82□□□□□ -0.36
VRK3-214ENST00000598553 ROBO3Q96MS0 1386 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 SLC34A2O95436 690 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 SGPL1O95470 568 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 IGHDP01880 384 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 EEF2P13639 858 aaKnown RBP12.81□□□□□ -0.36
VRK3-214ENST00000598553 MX1P20591 662 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 RASA1P20936 1047 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms