RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ARHGAP39Q9C0H5 1083 aa13.33□□□□□ -0.28
VRK3-210ENST00000596121 CABP5Q9NP86 173 aa13.33□□□□□ -0.28
VRK3-210ENST00000596121 PEX10O60683 326 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 FGAP02671 866 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 HSPD1P10809 573 aaKnown RBP13.32□□□□□ -0.28
VRK3-210ENST00000596121 BCRP11274 1271 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 SP3Q02447 781 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 PPARAQ07869 468 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 ALX1Q15699 326 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 ZYXQ15942 572 aaKnown RBP13.32□□□□□ -0.28
VRK3-210ENST00000596121 CTU1Q7Z7A3 348 aaKnown RBP13.32□□□□□ -0.28
VRK3-210ENST00000596121 AMOTL1Q8IY63 956 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 NKX2-3Q8TAU0 364 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 NAPBQ9H115 298 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 TAOK2Q9UL54 1235 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 SLC45A1Q9Y2W3 748 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 CCDC171Q6TFL3 1326 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 LOC285556D6RIA3 1793 aa13.32□□□□□ -0.28
VRK3-210ENST00000596121 C19orf81C9J6K1 198 aa13.31□□□□□ -0.28
VRK3-210ENST00000596121 ECM2O94769 699 aaPredicted RBP13.31□□□□□ -0.28
VRK3-210ENST00000596121 CTDSPL2Q05D32 466 aa13.31□□□□□ -0.28
VRK3-210ENST00000596121 USP17L2Q6R6M4 530 aa13.31□□□□□ -0.28
VRK3-210ENST00000596121 TMEM179Q6ZVK1 233 aa13.31□□□□□ -0.28
VRK3-210ENST00000596121 CCDC17Q96LX7 622 aa13.31□□□□□ -0.28
VRK3-210ENST00000596121 NACAP1Q9BZK3 213 aa13.31□□□□□ -0.28
VRK3-210ENST00000596121 NBPF3Q9H094 633 aa13.31□□□□□ -0.28
VRK3-210ENST00000596121 KIAA1683Q9H0B3 1180 aa13.31□□□□□ -0.28
VRK3-210ENST00000596121 ASCC2Q9H1I8 757 aaPredicted RBP13.31□□□□□ -0.28
VRK3-210ENST00000596121 HOXA7P31268 230 aaPredicted RBP13.3□□□□□ -0.28
VRK3-210ENST00000596121 OTOP1Q7RTM1 612 aa13.3□□□□□ -0.28
VRK3-210ENST00000596121 C12orf42Q96LP6 360 aa13.3□□□□□ -0.28
VRK3-210ENST00000596121 PARK7Q99497 189 aaKnown RBP13.3□□□□□ -0.28
VRK3-210ENST00000596121 P2RX7Q99572 595 aaKnown RBP13.3□□□□□ -0.28
VRK3-210ENST00000596121 DIAPH3Q9NSV4 1193 aa13.3□□□□□ -0.28
VRK3-210ENST00000596121 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.3□□□□□ -0.28
VRK3-210ENST00000596121 ZSWIM8A7E2V4 1837 aa13.29□□□□□ -0.28
VRK3-210ENST00000596121 IGKV6D-41A0A0C4DH26 115 aa13.29□□□□□ -0.28
VRK3-210ENST00000596121 EEF2P13639 858 aaKnown RBP13.29□□□□□ -0.28
VRK3-210ENST00000596121 CHMLP26374 656 aa13.29□□□□□ -0.28
VRK3-210ENST00000596121 LACTBP83111 547 aaPredicted RBP13.29□□□□□ -0.28
VRK3-210ENST00000596121 FAM47AQ5JRC9 791 aa13.29□□□□□ -0.28
VRK3-210ENST00000596121 ABHD8Q96I13 439 aa13.29□□□□□ -0.28
VRK3-210ENST00000596121 CCDC136Q96JN2 1154 aa13.29□□□□□ -0.28
VRK3-210ENST00000596121 FEZ1Q99689 392 aa13.29□□□□□ -0.28
VRK3-210ENST00000596121 MKNK2Q9HBH9 465 aa13.29□□□□□ -0.28
VRK3-210ENST00000596121 TMOD4Q9NZQ9 345 aa13.29□□□□□ -0.28
VRK3-210ENST00000596121 ANAPC4Q9UJX5 808 aa13.29□□□□□ -0.28
VRK3-210ENST00000596121 GREB1LQ9C091 1923 aaPredicted RBP13.29□□□□□ -0.28
VRK3-210ENST00000596121 HTTP42858 3142 aa13.28□□□□□ -0.28
VRK3-210ENST00000596121 CENPBP07199 599 aaPredicted RBP13.28□□□□□ -0.28
VRK3-210ENST00000596121 FGRP09769 529 aa13.28□□□□□ -0.28
VRK3-210ENST00000596121 VCAM1P19320 739 aa13.28□□□□□ -0.28
VRK3-210ENST00000596121 HAND2P61296 217 aa13.28□□□□□ -0.28
VRK3-210ENST00000596121 ICA1Q05084 483 aa13.28□□□□□ -0.28
VRK3-210ENST00000596121 ERO1AQ96HE7 468 aa13.28□□□□□ -0.28
VRK3-210ENST00000596121 TMX2Q9Y320 296 aa13.28□□□□□ -0.28
VRK3-210ENST00000596121 TRIM17Q9Y577 477 aa13.28□□□□□ -0.28
VRK3-210ENST00000596121 MYH8P13535 1937 aa13.27□□□□□ -0.28
VRK3-210ENST00000596121 HIP1O00291 1037 aa13.27□□□□□ -0.29
VRK3-210ENST00000596121 OSBPP22059 807 aa13.27□□□□□ -0.29
VRK3-210ENST00000596121 CATSPERGQ6ZRH7 1159 aa13.27□□□□□ -0.29
VRK3-210ENST00000596121 ANKRD13CQ8N6S4 541 aa13.27□□□□□ -0.29
VRK3-210ENST00000596121 SMCR8Q8TEV9 937 aaPredicted RBP13.27□□□□□ -0.29
VRK3-210ENST00000596121 TRIM47Q96LD4 638 aa13.27□□□□□ -0.29
VRK3-210ENST00000596121 KANSL2Q9H9L4 492 aa13.27□□□□□ -0.29
VRK3-210ENST00000596121 EFCC1Q9HA90 598 aa13.27□□□□□ -0.29
VRK3-210ENST00000596121 TXNRD2Q9NNW7 524 aa13.27□□□□□ -0.29
VRK3-210ENST00000596121 RBPJLQ9UBG7 517 aa13.27□□□□□ -0.29
VRK3-210ENST00000596121 ZMYM6O95789 1325 aa13.27□□□□□ -0.29
VRK3-210ENST00000596121 CNMDO75829 334 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 NEFLP07196 543 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 USP14P54578 494 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 HERVK_113P62684 666 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 TFAP4Q01664 338 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 ATP2B2Q01814 1243 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 PTH1RQ03431 593 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 PABPC4Q13310 644 aaKnown RBP eCLIP13.26□□□□□ -0.29
VRK3-210ENST00000596121 Q3C1V9 767 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 TBC1D10CQ8IV04 446 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 ZNF444Q8N0Y2 327 aaPredicted RBP13.26□□□□□ -0.29
VRK3-210ENST00000596121 SPICE1Q8N0Z3 855 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 NEDD1Q8NHV4 660 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 CEP95Q96GE4 821 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 RPAP3Q9H6T3 665 aaPredicted RBP13.26□□□□□ -0.29
VRK3-210ENST00000596121 VCPKMTQ9H867 229 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 IL17RBQ9NRM6 502 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 PTPN22Q9Y2R2 807 aa13.26□□□□□ -0.29
VRK3-210ENST00000596121 USP17L15C9J2P7 530 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 USP17L13C9JLJ4 530 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 USP17L11C9JVI0 530 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 USP17L18D6R9N7 530 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 USP17L22D6RA61 530 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 USP17L17D6RBQ6 530 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 USP17L19D6RCP7 530 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 USP17L20D6RJB6 530 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 ORC4O43929 436 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 NMT2O60551 498 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 PSMC4P43686 418 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 IRX3P78415 501 aaPredicted RBP13.25□□□□□ -0.29
VRK3-210ENST00000596121 PDE4BQ07343 736 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms