RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 C12orf60Q5U649 245 aa18.14■□□□□ 0.49
TRIM28-205ENST00000595028 DYNLL2Q96FJ2 89 aa18.14■□□□□ 0.49
TRIM28-205ENST00000595028 CABP5Q9NP86 173 aa18.14■□□□□ 0.49
TRIM28-205ENST00000595028 CYP2D7A0A087X1C5 515 aa18.13■□□□□ 0.49
TRIM28-205ENST00000595028 USP17L12C9JPN9 530 aa18.13■□□□□ 0.49
TRIM28-205ENST00000595028 USP17L21D6R901 530 aa18.13■□□□□ 0.49
TRIM28-205ENST00000595028 GPAA1O43292 621 aa18.13■□□□□ 0.49
TRIM28-205ENST00000595028 IGHDP01880 384 aa18.13■□□□□ 0.49
TRIM28-205ENST00000595028 RAB3GAP1Q15042 981 aa18.13■□□□□ 0.49
TRIM28-205ENST00000595028 FEZ1Q99689 392 aa18.13■□□□□ 0.49
TRIM28-205ENST00000595028 LNPKQ9C0E8 428 aa18.13■□□□□ 0.49
TRIM28-205ENST00000595028 ARPP21Q9UBL0 812 aaPredicted RBP18.13■□□□□ 0.49
TRIM28-205ENST00000595028 GREB1LQ9C091 1923 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-205ENST00000595028 ECM2O94769 699 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-205ENST00000595028 OSBPP22059 807 aa18.12■□□□□ 0.49
TRIM28-205ENST00000595028 GUCY1A2P33402 732 aa18.12■□□□□ 0.49
TRIM28-205ENST00000595028 PSMC4P43686 418 aa18.12■□□□□ 0.49
TRIM28-205ENST00000595028 TRIM47Q96LD4 638 aa18.12■□□□□ 0.49
TRIM28-205ENST00000595028 C12orf42Q96LP6 360 aa18.12■□□□□ 0.49
TRIM28-205ENST00000595028 ASCC2Q9H1I8 757 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-205ENST00000595028 GSG1L2A8MUP6 293 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 SMIM22K7EJ46 135 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 GNAT2P19087 354 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 HOXA7P31268 230 aaPredicted RBP18.11■□□□□ 0.49
TRIM28-205ENST00000595028 PRMT2P55345 433 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 FAM110CQ1W6H9 321 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 ZMYM1Q5SVZ6 1142 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 B4GALNT3Q6L9W6 998 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 GIMAP6Q6P9H5 292 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 CTR9Q6PD62 1173 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 USP17L2Q6R6M4 530 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 C16orf86Q6ZW13 317 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 SH3TC2Q8TF17 1288 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 DPF3Q92784 378 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 EPB41L4AQ9HCS5 686 aaPredicted RBP18.11■□□□□ 0.49
TRIM28-205ENST00000595028 EMILIN3Q9NT22 766 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 ROBO3Q96MS0 1386 aa18.11■□□□□ 0.49
TRIM28-205ENST00000595028 MPHOSPH10O00566 681 aaKnown RBP18.1■□□□□ 0.49
TRIM28-205ENST00000595028 FMNL1O95466 1100 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-205ENST00000595028 GCLCP48506 637 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-205ENST00000595028 USP14P54578 494 aa18.1■□□□□ 0.49
TRIM28-205ENST00000595028 FCGRTP55899 365 aa18.1■□□□□ 0.49
TRIM28-205ENST00000595028 IRX3P78415 501 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-205ENST00000595028 NUCB1Q02818 461 aa18.1■□□□□ 0.49
TRIM28-205ENST00000595028 SEPT2Q15019 361 aa18.1■□□□□ 0.49
TRIM28-205ENST00000595028 TMEM179Q6ZVK1 233 aa18.1■□□□□ 0.49
TRIM28-205ENST00000595028 CHD1LQ86WJ1 897 aa18.1■□□□□ 0.49
TRIM28-205ENST00000595028 ACER1Q8TDN7 264 aa18.1■□□□□ 0.49
TRIM28-205ENST00000595028 EVI5LQ96CN4 794 aa18.1■□□□□ 0.49
TRIM28-205ENST00000595028 SEC62Q99442 399 aaKnown RBP18.1■□□□□ 0.49
TRIM28-205ENST00000595028 KIAA1683Q9H0B3 1180 aa18.1■□□□□ 0.49
TRIM28-205ENST00000595028 PRO3102Q9H379 93 aa18.1■□□□□ 0.49
TRIM28-205ENST00000595028 MYPNQ86TC9 1320 aa18.09■□□□□ 0.49
TRIM28-205ENST00000595028 AKR1B1P15121 316 aa18.09■□□□□ 0.49
TRIM28-205ENST00000595028 CDK8P49336 464 aa18.09■□□□□ 0.49
TRIM28-205ENST00000595028 IRX6P78412 446 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-205ENST00000595028 ZYXQ15942 572 aaKnown RBP18.09■□□□□ 0.49
TRIM28-205ENST00000595028 SBK1Q52WX2 424 aa18.09■□□□□ 0.49
TRIM28-205ENST00000595028 ANKRD13CQ8N6S4 541 aa18.09■□□□□ 0.49
TRIM28-205ENST00000595028 SRRDQ9UH36 339 aa18.09■□□□□ 0.49
TRIM28-205ENST00000595028 DOCK3Q8IZD9 2030 aa18.09■□□□□ 0.49
TRIM28-205ENST00000595028 VCAM1P19320 739 aa18.08■□□□□ 0.48
TRIM28-205ENST00000595028 SHISA4Q96DD7 197 aa18.08■□□□□ 0.48
TRIM28-205ENST00000595028 CCDC17Q96LX7 622 aa18.08■□□□□ 0.48
TRIM28-205ENST00000595028 UNC80Q8N2C7 3258 aa18.08■□□□□ 0.48
TRIM28-205ENST00000595028 HOXD10P28358 340 aa18.07■□□□□ 0.48
TRIM28-205ENST00000595028 TDO2P48775 406 aa18.07■□□□□ 0.48
TRIM28-205ENST00000595028 HERVK_113P62684 666 aa18.07■□□□□ 0.48
TRIM28-205ENST00000595028 CLEC10AQ8IUN9 316 aa18.07■□□□□ 0.48
TRIM28-205ENST00000595028 MORF4L1Q9UBU8 362 aa18.07■□□□□ 0.48
TRIM28-205ENST00000595028 ICA1Q05084 483 aa18.06■□□□□ 0.48
TRIM28-205ENST00000595028 PRKCZQ05513 592 aa18.06■□□□□ 0.48
TRIM28-205ENST00000595028 PLEKHM2Q8IWE5 1019 aa18.06■□□□□ 0.48
TRIM28-205ENST00000595028 P2RX7Q99572 595 aaKnown RBP18.06■□□□□ 0.48
TRIM28-205ENST00000595028 A0A0G2JMZ2 1700 aa18.06■□□□□ 0.48
TRIM28-205ENST00000595028 PARP14Q460N5 1801 aa18.05■□□□□ 0.48
TRIM28-205ENST00000595028 A0A1W2PRG0 241 aa18.05■□□□□ 0.48
TRIM28-205ENST00000595028 MINDY4BA8MYZ0 360 aa18.05■□□□□ 0.48
TRIM28-205ENST00000595028 PATL2C9JE40 543 aaKnown RBP18.05■□□□□ 0.48
TRIM28-205ENST00000595028 TNPO2O14787 897 aaKnown RBP18.05■□□□□ 0.48
TRIM28-205ENST00000595028 APPP05067 770 aa18.05■□□□□ 0.48
TRIM28-205ENST00000595028 MNX1P50219 401 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-205ENST00000595028 TICAM2Q86XR7 235 aa18.05■□□□□ 0.48
TRIM28-205ENST00000595028 IFNL3Q8IZI9 196 aa18.05■□□□□ 0.48
TRIM28-205ENST00000595028 GTF3C2Q8WUA4 911 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-205ENST00000595028 NACAP1Q9BZK3 213 aa18.05■□□□□ 0.48
TRIM28-205ENST00000595028 OSBPL3Q9H4L5 887 aa18.05■□□□□ 0.48
TRIM28-205ENST00000595028 RLFQ13129 1914 aa18.05■□□□□ 0.48
TRIM28-205ENST00000595028 USP17L15C9J2P7 530 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 USP17L13C9JLJ4 530 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 USP17L11C9JVI0 530 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 USP17L18D6R9N7 530 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 USP17L22D6RA61 530 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 USP17L17D6RBQ6 530 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 USP17L19D6RCP7 530 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 USP17L20D6RJB6 530 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 SOX1O00570 391 aaPredicted RBP18.04■□□□□ 0.48
TRIM28-205ENST00000595028 USP17L24Q0WX57 530 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 CCDC129Q6ZRS4 1044 aa18.04■□□□□ 0.48
TRIM28-205ENST00000595028 RAET1EQ8TD07 263 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms