RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	KCNG1	Q9UIX4	513 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	TUBE1	Q9UJT0	475 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	PCDHA5	Q9Y5H7	936 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	MRFAP1	Q9Y605	127 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	ANO9	A1A5B4	782 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	LAD1	O00515	517 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	PPFIA4	O75335	1185 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	KRT18	P05783	430 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	IDE	P14735	1019 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	IFNAR1	P17181	557 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	HNRNPH2	P55795	449 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	MAP3K9	P80192	1104 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	PPP2R5E	Q16537	467 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	RABL6	Q3YEC7	729 aa	Predicted RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	AKNAD1	Q5T1N1	836 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	DTHD1	Q6ZMT9	781 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	RUFY4	Q6ZNE9	571 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	CCDC121	Q6ZUS5	278 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	MKL1	Q969V6	931 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	LZTS2	Q9BRK4	669 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	ZBTB3	Q9H5J0	574 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	KAT14	Q9H8E8	782 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	INCENP	Q9NQS7	918 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	PRDM11	Q9NQV5	511 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	SRPRB	Q9Y5M8	271 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	ITIH6	Q6UXX5	1313 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	TARSL2	A2RTX5	802 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	MINDY4B	A8MYZ0	360 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	RANBP6	O60518	1105 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	FGA	P02671	866 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	LDHC	P07864	332 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	NF2	P35240	595 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	LONP1	P36776	959 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	ZC3H6	P61129	1189 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	TTC38	Q5R3I4	469 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	ALS2CL	Q60I27	953 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	E4F1	Q66K89	784 aa	Predicted RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	RICTOR	Q6R327	1708 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	CHST3	Q7LGC8	479 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	ARMC9	Q7Z3E5	817 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	SLF2	Q8IX21	1173 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	ZCRB1	Q8TBF4	217 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	LPIN2	Q92539	896 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	TRERF1	Q96PN7	1200 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	3.96	□□□□□ -1.78	3e-6	■■□□□ 12.1
VMP1-216	ENST00000592790	GOLPH3L	Q9H4A5	285 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	SERTAD1	Q9UHV2	236 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	CTNND2	Q9UQB3	1225 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	PPFIA3	O75145	1194 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	PCCA	P05165	728 aa	Predicted RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	GNA11	P29992	359 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	TIMM10	P62072	90 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	GSTO1	P78417	241 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	IFFO1	Q0D2I5	559 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	CFAP221	Q4G0U5	840 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	GLE1	Q53GS7	698 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	TDRD12	Q587J7	1177 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	RNF187	Q5TA31	235 aa	Predicted RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	C8orf74	Q6P047	294 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	ARMCX5	Q6P1M9	558 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	APOA5	Q6Q788	366 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	NEK11	Q8NG66	645 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	LRRC59	Q96AG4	307 aa	Known RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	NOX5	Q96PH1	765 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	MYCBP	Q99417	103 aa	Predicted RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	NAP1L3	Q99457	506 aa	Predicted RBP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	CABP5	Q9NP86	173 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	AATF	Q9NY61	560 aa	Known RBP eCLIP	3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	RWDD2A	Q9UIY3	292 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	RASAL2	Q9UJF2	1139 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790	ADAM21	Q9UKJ8	722 aa		3.96	□□□□□ -1.78
VMP1-216	ENST00000592790		B4E1Z4	1266 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	SH2B2	O14492	632 aa	Predicted RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	DDAH1	O94760	285 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	MMP1	P03956	469 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	PHKG2	P15735	406 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	KCNA6	P17658	529 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	ADK	P55263	362 aa	Known RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	SLC39A6	Q13433	755 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	ALX1	Q15699	326 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	MAATS1	Q7Z4T9	603 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	AGXT2	Q9BYV1	514 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	TMX1	Q9H3N1	280 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	PDE11A	Q9HCR9	933 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	MAN1B1	Q9UKM7	699 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	HYOU1	Q9Y4L1	999 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	EPN1	Q9Y6I3	576 aa	Predicted RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	CPD	O75976	1380 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	CHD2	O14647	1828 aa	Known RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	MAGEB6P1	A0A0J9YX57	407 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	NUTM2B	A6NNL0	878 aa	Predicted RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	NUTM2E	B1AL46	878 aa	Predicted RBP	3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	KCNJ18	B7U540	433 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790		H7C1W4	665 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	NDUFAB1	O14561	156 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	PDE8A	O60658	829 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	MFAP3L	O75121	409 aa		3.95	□□□□□ -1.78
VMP1-216	ENST00000592790	GNA14	O95837	355 aa		3.95	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 153 ms