RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 EMILIN3Q9NT22 766 aa13.61□□□□□ -0.23
ZNF540-209ENST00000590588 FRMPD3Q5JV73 1810 aa13.61□□□□□ -0.23
ZNF540-209ENST00000590588 SYNGAP1Q96PV0 1343 aa13.61□□□□□ -0.23
ZNF540-209ENST00000590588 USP17L15C9J2P7 530 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 USP17L13C9JLJ4 530 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 USP17L11C9JVI0 530 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 USP17L18D6R9N7 530 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 USP17L22D6RA61 530 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 USP17L17D6RBQ6 530 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 USP17L19D6RCP7 530 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 USP17L20D6RJB6 530 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 SEPT4O43236 478 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 IGHA2P01877 340 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 CLTBP09497 229 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 IL15P40933 162 aaPredicted RBP13.6□□□□□ -0.23
ZNF540-209ENST00000590588 FPGSQ05932 587 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 USP17L24Q0WX57 530 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 ANO1Q5XXA6 986 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 OLFML2BQ68BL8 750 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 DPP9Q86TI2 863 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 TEX11Q8IYF3 940 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 FERMT2Q96AC1 680 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 RLFQ13129 1914 aa13.6□□□□□ -0.23
ZNF540-209ENST00000590588 KIAA0355O15063 1070 aa13.59□□□□□ -0.23
ZNF540-209ENST00000590588 ADORA1P30542 326 aa13.59□□□□□ -0.23
ZNF540-209ENST00000590588 JAG1P78504 1218 aa13.59□□□□□ -0.23
ZNF540-209ENST00000590588 LRRC41Q15345 812 aa13.59□□□□□ -0.23
ZNF540-209ENST00000590588 ZNF384Q8TF68 577 aa13.59□□□□□ -0.23
ZNF540-209ENST00000590588 NSUN4Q96CB9 384 aaKnown RBP13.59□□□□□ -0.23
ZNF540-209ENST00000590588 TRIM34Q9BYJ4 488 aa13.59□□□□□ -0.23
ZNF540-209ENST00000590588 HCN4Q9Y3Q4 1203 aa13.59□□□□□ -0.23
ZNF540-209ENST00000590588 SALL2Q9Y467 1007 aaPredicted RBP13.59□□□□□ -0.23
ZNF540-209ENST00000590588 ATAD5Q96QE3 1844 aa13.59□□□□□ -0.23
ZNF540-209ENST00000590588 STRNO43815 780 aa13.58□□□□□ -0.24
ZNF540-209ENST00000590588 CENPBP07199 599 aaPredicted RBP13.58□□□□□ -0.24
ZNF540-209ENST00000590588 TIMM10P62072 90 aa13.58□□□□□ -0.24
ZNF540-209ENST00000590588 LBX2Q6XYB7 198 aa13.58□□□□□ -0.24
ZNF540-209ENST00000590588 CATSPERGQ6ZRH7 1159 aa13.58□□□□□ -0.24
ZNF540-209ENST00000590588 METTL16Q86W50 562 aaKnown RBP13.58□□□□□ -0.24
ZNF540-209ENST00000590588 CRACR2BQ8N4Y2 399 aaPredicted RBP13.58□□□□□ -0.24
ZNF540-209ENST00000590588 TSPYL2Q9H2G4 693 aaPredicted RBP13.58□□□□□ -0.24
ZNF540-209ENST00000590588 PRDM12Q9H4Q4 367 aa13.58□□□□□ -0.24
ZNF540-209ENST00000590588 TMEM39AQ9NV64 488 aa13.58□□□□□ -0.24
ZNF540-209ENST00000590588 ZBTB21Q9ULJ3 1066 aa13.58□□□□□ -0.24
ZNF540-209ENST00000590588 GDF11O95390 407 aa13.57□□□□□ -0.24
ZNF540-209ENST00000590588 CCDC85BQ15834 202 aaPredicted RBP13.57□□□□□ -0.24
ZNF540-209ENST00000590588 CCDC129Q6ZRS4 1044 aa13.57□□□□□ -0.24
ZNF540-209ENST00000590588 C12orf42Q96LP6 360 aa13.57□□□□□ -0.24
ZNF540-209ENST00000590588 NOL10Q9BSC4 688 aaKnown RBP13.57□□□□□ -0.24
ZNF540-209ENST00000590588 SLC5A4Q9NY91 659 aa13.57□□□□□ -0.24
ZNF540-209ENST00000590588 BTBD7Q9P203 1132 aa13.57□□□□□ -0.24
ZNF540-209ENST00000590588 PHF24Q9UPV7 400 aa13.57□□□□□ -0.24
ZNF540-209ENST00000590588 BAG3O95817 575 aa13.56□□□□□ -0.24
ZNF540-209ENST00000590588 IGFBP4P22692 258 aa13.56□□□□□ -0.24
ZNF540-209ENST00000590588 USP14P54578 494 aa13.56□□□□□ -0.24
ZNF540-209ENST00000590588 MVPQ14764 893 aaKnown RBP13.56□□□□□ -0.24
ZNF540-209ENST00000590588 SH3RF3Q8TEJ3 882 aaPredicted RBP13.56□□□□□ -0.24
ZNF540-209ENST00000590588 XAGE2Q96GT9 111 aa13.56□□□□□ -0.24
ZNF540-209ENST00000590588 PBX4Q9BYU1 374 aa13.56□□□□□ -0.24
ZNF540-209ENST00000590588 DNAJC18Q9H819 358 aa13.56□□□□□ -0.24
ZNF540-209ENST00000590588 RAI14Q9P0K7 980 aa13.56□□□□□ -0.24
ZNF540-209ENST00000590588 PTPRCP08575 1304 aa13.56□□□□□ -0.24
ZNF540-209ENST00000590588 XIRP2A4UGR9 3374 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 PQBP1O60828 265 aaKnown RBP13.55□□□□□ -0.24
ZNF540-209ENST00000590588 BMP1P13497 986 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 PLCG2P16885 1265 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 ADORA2AP29274 412 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 ZYXQ15942 572 aaKnown RBP13.55□□□□□ -0.24
ZNF540-209ENST00000590588 SHROOM1Q2M3G4 852 aaPredicted RBP13.55□□□□□ -0.24
ZNF540-209ENST00000590588 PRAMEF19Q5SWL8 479 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 CCDC174Q6PII3 467 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 RNF180Q86T96 592 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 SLC44A5Q8NCS7 719 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 TOX2Q96NM4 488 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 FEZ1Q99689 392 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 LRFN3Q9BTN0 628 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 CXXC1Q9P0U4 656 aaPredicted RBP13.55□□□□□ -0.24
ZNF540-209ENST00000590588 AKAP2Q9Y2D5 859 aa13.55□□□□□ -0.24
ZNF540-209ENST00000590588 NCOR1O75376 2440 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 A0A1B0GUL7 405 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 DCDC2CA8MYV0 355 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 TIMP1P01033 207 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 PBX2P40425 430 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 FAAP100Q0VG06 881 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 ADGRE1Q14246 886 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 AAK1Q2M2I8 961 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 FAM47AQ5JRC9 791 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 ATF7IPQ6VMQ6 1270 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 TBC1D9Q6ZT07 1266 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 MRPL50Q8N5N7 158 aaKnown RBP13.54□□□□□ -0.24
ZNF540-209ENST00000590588 SPATA5Q8NB90 893 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 TGFBRAP1Q8WUH2 860 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 NECAB3Q96P71 396 aaPredicted RBP13.54□□□□□ -0.24
ZNF540-209ENST00000590588 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.54□□□□□ -0.24
ZNF540-209ENST00000590588 HMG20BQ9P0W2 317 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 LRP2BPQ9P2M1 347 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 PALD1Q9ULE6 856 aa13.54□□□□□ -0.24
ZNF540-209ENST00000590588 GRXCR1A8MXD5 290 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 COBLO75128 1261 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 GH2P01242 217 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms