RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 SEPT6Q14141 434 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 TNNI3KQ59H18 835 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 PERM1Q5SV97 790 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 LLGL2Q6P1M3 1020 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 ELMSAN1Q6PJG2 1045 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 ADAMTSL4Q6UY14 1074 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 SV2AQ7L0J3 742 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 NRKQ7Z2Y5 1582 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 STK35Q8TDR2 534 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 FERD3LQ96RJ6 166 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 EMILIN2Q9BXX0 1053 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 LACRTQ9GZZ8 138 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 SMG9Q9H0W8 520 aaKnown RBP7.48□□□□□ -1.21
SMAD4-208ENST00000589706 CBX8Q9HC52 389 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 AVENQ9NQS1 362 aaPredicted RBP7.48□□□□□ -1.21
SMAD4-208ENST00000589706 MRPL42Q9Y6G3 142 aaKnown RBP7.48□□□□□ -1.21
SMAD4-208ENST00000589706 UTRNP46939 3433 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 FAM177BA6PVY3 158 aa7.47□□□□□ -1.21
SMAD4-208ENST00000589706 PPFIA3O75145 1194 aa7.47□□□□□ -1.21
SMAD4-208ENST00000589706 ESRRAP11474 423 aaPredicted RBP7.47□□□□□ -1.21
SMAD4-208ENST00000589706 GIPRP48546 466 aa7.47□□□□□ -1.21
SMAD4-208ENST00000589706 HSP90AA2PQ14568 343 aaPredicted RBP7.47□□□□□ -1.21
SMAD4-208ENST00000589706 TCEAL1Q15170 157 aa7.47□□□□□ -1.21
SMAD4-208ENST00000589706 KRT28Q7Z3Y7 464 aa7.47□□□□□ -1.21
SMAD4-208ENST00000589706 REXO1Q8N1G1 1221 aaKnown RBP7.47□□□□□ -1.21
SMAD4-208ENST00000589706 GRIN3AQ8TCU5 1115 aa7.47□□□□□ -1.21
SMAD4-208ENST00000589706 CRBNQ96SW2 442 aa7.47□□□□□ -1.21
SMAD4-208ENST00000589706 PDGFDQ9GZP0 370 aaPredicted RBP7.47□□□□□ -1.21
SMAD4-208ENST00000589706 BTG4Q9NY30 223 aa7.47□□□□□ -1.21
SMAD4-208ENST00000589706 GMPR2Q9P2T1 348 aaKnown RBP7.47□□□□□ -1.21
SMAD4-208ENST00000589706 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.47□□□□□ -1.21
SMAD4-208ENST00000589706 TRIM33Q9UPN9 1127 aa7.47□□□□□ -1.21
SMAD4-208ENST00000589706 ANKRD30AQ9BXX3 1397 aa7.46□□□□□ -1.21
SMAD4-208ENST00000589706 ZBTB7AO95365 584 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 HSPA6P17066 643 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 HSD3B2P26439 372 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 ADH7P40394 386 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 CALD1Q05682 793 aaKnown RBP7.46□□□□□ -1.22
SMAD4-208ENST00000589706 FBXW10Q5XX13 1052 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 LRP10Q7Z4F1 713 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 REC114Q7Z4M0 266 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 ANKRD13AQ8IZ07 590 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 FAM169BQ8N8A8 192 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 DDX54Q8TDD1 881 aaKnown RBP7.46□□□□□ -1.22
SMAD4-208ENST00000589706 NANOS1Q8WY41 292 aaKnown RBP7.46□□□□□ -1.22
SMAD4-208ENST00000589706 GAL3ST3Q96A11 431 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 IPO9Q96P70 1041 aaKnown RBP7.46□□□□□ -1.22
SMAD4-208ENST00000589706 DEPDC7Q96QD5 511 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 LPIN3Q9BQK8 851 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 BRMS1Q9HCU9 246 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 FRRS1LQ9P0K9 344 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 KLF15Q9UIH9 416 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 NAGPAQ9UK23 515 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 CROCC2H7BZ55 1655 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 MYOM1P52179 1685 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 SPATA31A5Q5VU36 1347 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 SPATA31A7Q8IWB4 1347 aa7.46□□□□□ -1.22
SMAD4-208ENST00000589706 A0A0U1RQG5 324 aaPredicted RBP7.45□□□□□ -1.22
SMAD4-208ENST00000589706 ADARB2-AS1A8MUL3 147 aa7.45□□□□□ -1.22
SMAD4-208ENST00000589706 BPNT1O95861 308 aa7.45□□□□□ -1.22
SMAD4-208ENST00000589706 ANP32AP39687 249 aaKnown RBP7.45□□□□□ -1.22
SMAD4-208ENST00000589706 ZNF252P-AS1Q0IIN9 211 aa7.45□□□□□ -1.22
SMAD4-208ENST00000589706 IKBKEQ14164 716 aa7.45□□□□□ -1.22
SMAD4-208ENST00000589706 RASA3Q14644 834 aa7.45□□□□□ -1.22
SMAD4-208ENST00000589706 SCARA3Q6AZY7 606 aa7.45□□□□□ -1.22
SMAD4-208ENST00000589706 GK5Q6ZS86 529 aa7.45□□□□□ -1.22
SMAD4-208ENST00000589706 OR6P1Q8NGX9 317 aa7.45□□□□□ -1.22
SMAD4-208ENST00000589706 SH2B1Q9NRF2 756 aaPredicted RBP7.45□□□□□ -1.22
SMAD4-208ENST00000589706 SNTG2Q9NY99 539 aa7.45□□□□□ -1.22
SMAD4-208ENST00000589706 ZNRF3Q9ULT6 936 aa7.45□□□□□ -1.22
SMAD4-208ENST00000589706 THSD7AQ9UPZ6 1657 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 DAPK1P53355 1430 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 NRAPQ86VF7 1730 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 CLSTN1O94985 981 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 ARAFP10398 606 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 IMPDH2P12268 514 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 SNRPBP14678 240 aaKnown RBP7.44□□□□□ -1.22
SMAD4-208ENST00000589706 MX2P20592 715 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 ADH6P28332 368 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 CDC27P30260 824 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 CABP4P57796 275 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 RPL6Q02878 288 aaKnown RBP7.44□□□□□ -1.22
SMAD4-208ENST00000589706 CLCQ05315 142 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 GPR162Q16538 588 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 KANK3Q6NY19 840 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 TTC9Q92623 222 aa7.44□□□□□ -1.22
SMAD4-208ENST00000589706 CASZ1Q86V15 1759 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 IQGAP3Q86VI3 1631 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 FAM221BA6H8Z2 402 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 CCDC85CA6NKD9 419 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 SOX1O00570 391 aaPredicted RBP7.43□□□□□ -1.22
SMAD4-208ENST00000589706 HSP90AA1P07900 732 aaKnown RBP7.43□□□□□ -1.22
SMAD4-208ENST00000589706 PRELPP51888 382 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 PTPN11Q06124 597 aaPredicted RBP7.43□□□□□ -1.22
SMAD4-208ENST00000589706 AP3B2Q13367 1082 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 GDF6Q6KF10 455 aaPredicted RBP7.43□□□□□ -1.22
SMAD4-208ENST00000589706 PDZD3Q86UT5 571 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 CACTIN-AS1Q8N1I8 211 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 CELF2-AS1Q8N7Q2 184 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 RBBP8NLQ8NC74 664 aaPredicted RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms