RNA–Protein interactions for RNA: ENST00000587470.1

VMP1-205, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-205ENST00000587470 H3BS24 57 aa7.41□□□□□ -1.22
VMP1-205ENST00000587470 FLAD1Q8NFF5 587 aa7.41□□□□□ -1.22
VMP1-205ENST00000587470 PIWIL2Q8TC59 973 aaKnown RBP7.41□□□□□ -1.22
VMP1-205ENST00000587470 KRTAP4-9Q9BYQ8 210 aa7.41□□□□□ -1.22
VMP1-205ENST00000587470 PRR36Q9H6K5 1346 aa7.41□□□□□ -1.22
VMP1-205ENST00000587470 CC2D2AQ9P2K1 1620 aa7.41□□□□□ -1.22
VMP1-205ENST00000587470 YARSP54577 528 aaKnown RBP7.4□□□□□ -1.22
VMP1-205ENST00000587470 TNK2Q07912 1038 aa7.4□□□□□ -1.22
VMP1-205ENST00000587470 SNAP47Q5SQN1 464 aa7.4□□□□□ -1.22
VMP1-205ENST00000587470 GOLM1Q8NBJ4 401 aa7.4□□□□□ -1.22
VMP1-205ENST00000587470 FAM13CQ8NE31 585 aa7.4□□□□□ -1.22
VMP1-205ENST00000587470 DNAJB8Q8NHS0 232 aa7.4□□□□□ -1.22
VMP1-205ENST00000587470 BCL11AQ9H165 835 aa7.4□□□□□ -1.22
VMP1-205ENST00000587470 CARS2Q9HA77 564 aaKnown RBP7.4□□□□□ -1.22
VMP1-205ENST00000587470 UNC13AQ9UPW8 1703 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 UPK3BL1B0FP48 263 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 UPK3BL2E5RIL1 263 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 ERMP1Q7Z2K6 904 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 SLFN12Q8IYM2 578 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 GIPC2Q8TF65 315 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 PPP1R13LQ8WUF5 828 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 CYB5D2Q8WUJ1 264 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 TMEM40Q8WWA1 233 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 FAM168AQ92567 244 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 UBE2FQ969M7 185 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 ZSWIM5Q9P217 1185 aa7.39□□□□□ -1.23
VMP1-205ENST00000587470 FAM160A1Q05DH4 1040 aa7.38□□□□□ -1.23
VMP1-205ENST00000587470 MPP2Q14168 576 aa7.38□□□□□ -1.23
VMP1-205ENST00000587470 ZNF648Q5T619 568 aaPredicted RBP7.38□□□□□ -1.23
VMP1-205ENST00000587470 KBTBD4Q9NVX7 518 aa7.38□□□□□ -1.23
VMP1-205ENST00000587470 CTNND2Q9UQB3 1225 aa7.38□□□□□ -1.23
VMP1-205ENST00000587470 BICRAQ9NZM4 1560 aa7.37□□□□□ -1.23
VMP1-205ENST00000587470 ROBO2Q9HCK4 1378 aa7.37□□□□□ -1.23
VMP1-205ENST00000587470 GARTP22102 1010 aa7.37□□□□□ -1.23
VMP1-205ENST00000587470 AFMP43652 599 aa7.37□□□□□ -1.23
VMP1-205ENST00000587470 MRPL58Q14197 206 aaKnown RBP7.37□□□□□ -1.23
VMP1-205ENST00000587470 FAM196AQ6ZSG2 479 aa7.37□□□□□ -1.23
VMP1-205ENST00000587470 TMPRSS7Q7RTY8 843 aa7.37□□□□□ -1.23
VMP1-205ENST00000587470 Q96M66 194 aa7.37□□□□□ -1.23
VMP1-205ENST00000587470 REV1Q9UBZ9 1251 aa7.37□□□□□ -1.23
VMP1-205ENST00000587470 POLR3KQ9Y2Y1 108 aaPredicted RBP7.37□□□□□ -1.23
VMP1-205ENST00000587470 HTR3BO95264 441 aa7.36□□□□□ -1.23
VMP1-205ENST00000587470 REC114Q7Z4M0 266 aa7.36□□□□□ -1.23
VMP1-205ENST00000587470 CCDC120Q96HB5 630 aa7.36□□□□□ -1.23
VMP1-205ENST00000587470 COPRSQ9NQ92 184 aa7.36□□□□□ -1.23
VMP1-205ENST00000587470 KCNQ5Q9NR82 932 aa7.36□□□□□ -1.23
VMP1-205ENST00000587470 GRIN3BO60391 1043 aa7.35□□□□□ -1.23
VMP1-205ENST00000587470 EIF4A3P38919 411 aaKnown RBP7.35□□□□□ -1.23
VMP1-205ENST00000587470 GDNFP39905 211 aa7.35□□□□□ -1.23
VMP1-205ENST00000587470 FBXL19Q6PCT2 694 aa7.35□□□□□ -1.23
VMP1-205ENST00000587470 ZSWIM9Q86XI8 627 aa7.35□□□□□ -1.23
VMP1-205ENST00000587470 FBXO27Q8NI29 283 aa7.35□□□□□ -1.23
VMP1-205ENST00000587470 CCDC74BQ96LY2 380 aa7.35□□□□□ -1.23
VMP1-205ENST00000587470 DUSP15Q9H1R2 295 aaPredicted RBP7.35□□□□□ -1.23
VMP1-205ENST00000587470 TRIT1Q9H3H1 467 aaKnown RBP7.35□□□□□ -1.23
VMP1-205ENST00000587470 KCNH3Q9ULD8 1083 aa7.35□□□□□ -1.23
VMP1-205ENST00000587470 ZBTB7CA1YPR0 619 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 CHURC1-FNTBB4DL54 471 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 RBAK-RBAKDNI3L0D1 243 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 GREM1O60565 184 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 TNNI2P48788 182 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 MLECQ14165 292 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 KCNMB1Q16558 191 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 CWF19L2Q2TBE0 894 aaKnown RBP7.34□□□□□ -1.23
VMP1-205ENST00000587470 HS2ST1Q7LGA3 356 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 CILP2Q8IUL8 1156 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 RNF141Q8WVD5 230 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 ALPK1Q96QP1 1244 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 GPR62Q9BZJ7 368 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 GPATCH2Q9NW75 528 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 FAM53CQ9NYF3 392 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 KLHL3Q9UH77 587 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 GGT7Q9UJ14 662 aa7.34□□□□□ -1.23
VMP1-205ENST00000587470 SUPT16HQ9Y5B9 1047 aaKnown RBP7.34□□□□□ -1.23
VMP1-205ENST00000587470 CUX2O14529 1486 aa7.33□□□□□ -1.24
VMP1-205ENST00000587470 ESR1P03372 595 aa7.33□□□□□ -1.24
VMP1-205ENST00000587470 SRFP11831 508 aa7.33□□□□□ -1.24
VMP1-205ENST00000587470 ZNF124Q15973 351 aa7.33□□□□□ -1.24
VMP1-205ENST00000587470 TMCO4Q5TGY1 634 aa7.33□□□□□ -1.24
VMP1-205ENST00000587470 SPOCD1Q6ZMY3 1216 aa7.33□□□□□ -1.24
VMP1-205ENST00000587470 DTWD2Q8NBA8 298 aa7.33□□□□□ -1.24
VMP1-205ENST00000587470 LRRC3Q9BY71 257 aa7.33□□□□□ -1.24
VMP1-205ENST00000587470 C19orf73Q9NVV2 129 aa7.33□□□□□ -1.24
VMP1-205ENST00000587470 TLR3O15455 904 aaKnown RBP7.32□□□□□ -1.24
VMP1-205ENST00000587470 FARP2O94887 1054 aaPredicted RBP7.32□□□□□ -1.24
VMP1-205ENST00000587470 TPP2P29144 1249 aaPredicted RBP7.32□□□□□ -1.24
VMP1-205ENST00000587470 MESP2Q0VG99 397 aa7.32□□□□□ -1.24
VMP1-205ENST00000587470 FYB2Q5VWT5 728 aa7.32□□□□□ -1.24
VMP1-205ENST00000587470 CREG2Q8IUH2 290 aa7.32□□□□□ -1.24
VMP1-205ENST00000587470 BAHD1Q8TBE0 780 aaPredicted RBP7.32□□□□□ -1.24
VMP1-205ENST00000587470 ZNF296Q8WUU4 475 aaPredicted RBP7.32□□□□□ -1.24
VMP1-205ENST00000587470 ATE1O95260 518 aa7.31□□□□□ -1.24
VMP1-205ENST00000587470 GAB4Q2WGN9 574 aa7.31□□□□□ -1.24
VMP1-205ENST00000587470 PHACTR4Q8IZ21 702 aa7.31□□□□□ -1.24
VMP1-205ENST00000587470 KIRREL1Q96J84 757 aa7.31□□□□□ -1.24
VMP1-205ENST00000587470 KREMEN1Q96MU8 473 aa7.31□□□□□ -1.24
VMP1-205ENST00000587470 ASPNQ9BXN1 380 aa7.31□□□□□ -1.24
VMP1-205ENST00000587470 BRMS1Q9HCU9 246 aa7.31□□□□□ -1.24
VMP1-205ENST00000587470 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.31□□□□□ -1.24
VMP1-205ENST00000587470 SLAMF8Q9P0V8 285 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms