RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 CCDC17Q96LX7 622 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 STRBPQ96SI9 672 aaKnown RBP14.85□□□□□ -0.03
SS18-225ENST00000585121 P2RX7Q99572 595 aaKnown RBP14.85□□□□□ -0.03
SS18-225ENST00000585121 FSD1Q9BTV5 496 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 ARPP21Q9UBL0 812 aaPredicted RBP14.85□□□□□ -0.03
SS18-225ENST00000585121 ATAD5Q96QE3 1844 aa14.85□□□□□ -0.03
SS18-225ENST00000585121 PTPRFP10586 1907 aa14.84□□□□□ -0.03
SS18-225ENST00000585121 POTEFA5A3E0 1075 aa14.84□□□□□ -0.03
SS18-225ENST00000585121 MYCP01106 439 aaPredicted RBP14.84□□□□□ -0.03
SS18-225ENST00000585121 CDK8P49336 464 aa14.84□□□□□ -0.03
SS18-225ENST00000585121 GIMAP6Q6P9H5 292 aa14.84□□□□□ -0.03
SS18-225ENST00000585121 GPRC5AQ8NFJ5 357 aa14.84□□□□□ -0.03
SS18-225ENST00000585121 PI4K2BQ8TCG2 481 aa14.84□□□□□ -0.03
SS18-225ENST00000585121 OTUD7AQ8TE49 926 aaPredicted RBP14.84□□□□□ -0.03
SS18-225ENST00000585121 OSBP2Q969R2 916 aa14.84□□□□□ -0.03
SS18-225ENST00000585121 DYNLL2Q96FJ2 89 aa14.84□□□□□ -0.03
SS18-225ENST00000585121 C12orf42Q96LP6 360 aa14.84□□□□□ -0.03
SS18-225ENST00000585121 APPP05067 770 aa14.83□□□□□ -0.04
SS18-225ENST00000585121 FLT3LGP49771 235 aa14.83□□□□□ -0.04
SS18-225ENST00000585121 CTR9Q6PD62 1173 aa14.83□□□□□ -0.04
SS18-225ENST00000585121 C16orf86Q6ZW13 317 aa14.83□□□□□ -0.04
SS18-225ENST00000585121 SLC44A5Q8NCS7 719 aa14.83□□□□□ -0.04
SS18-225ENST00000585121 ACER1Q8TDN7 264 aa14.83□□□□□ -0.04
SS18-225ENST00000585121 SH2D4AQ9H788 454 aa14.83□□□□□ -0.04
SS18-225ENST00000585121 ARHGEF10LQ9HCE6 1279 aa14.83□□□□□ -0.04
SS18-225ENST00000585121 MORF4L1Q9UBU8 362 aa14.83□□□□□ -0.04
SS18-225ENST00000585121 GABRQQ9UN88 632 aa14.83□□□□□ -0.04
SS18-225ENST00000585121 CYP2D7A0A087X1C5 515 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 GPAA1O43292 621 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 ADCY3O60266 1144 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 GUCY1A2P33402 732 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 EVX2Q03828 476 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 IRF5Q13568 498 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 PAGR1Q9BTK6 254 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 CWC22Q9HCG8 908 aaKnown RBP14.82□□□□□ -0.04
SS18-225ENST00000585121 LOC285556D6RIA3 1793 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 NAV1Q8NEY1 1877 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 KIAA0100Q14667 2235 aaKnown RBP14.82□□□□□ -0.04
SS18-225ENST00000585121 VCAM1P19320 739 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 TDO2P48775 406 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 SBK1Q52WX2 424 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 CATSPERGQ6ZRH7 1159 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 POTEDQ86YR6 584 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 NACAP1Q9BZK3 213 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 ZNF287Q9HBT7 754 aa14.82□□□□□ -0.04
SS18-225ENST00000585121 CENPFP49454 3210 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 GSG1L2A8MUP6 293 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 MINDY4BA8MYZ0 360 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 PATL2C9JE40 543 aaKnown RBP14.81□□□□□ -0.04
SS18-225ENST00000585121 AKR1B1P15121 316 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 EN2P19622 333 aaPredicted RBP14.81□□□□□ -0.04
SS18-225ENST00000585121 MAPK4P31152 587 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 ICA1Q05084 483 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 EXOC6Q8TAG9 804 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 NKX2-3Q8TAU0 364 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 PXYLP1Q8TE99 480 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 MKNK2Q9HBH9 465 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 STAP2Q9UGK3 403 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 RABGAP1Q9Y3P9 1069 aa14.81□□□□□ -0.04
SS18-225ENST00000585121 M0R2C6 588 aa14.8□□□□□ -0.04
SS18-225ENST00000585121 PDE1AP54750 535 aa14.8□□□□□ -0.04
SS18-225ENST00000585121 ERVK-9P63128 1117 aa14.8□□□□□ -0.04
SS18-225ENST00000585121 ERVK-24P63145 666 aa14.8□□□□□ -0.04
SS18-225ENST00000585121 CCNA1P78396 465 aa14.8□□□□□ -0.04
SS18-225ENST00000585121 EVI5LQ96CN4 794 aa14.8□□□□□ -0.04
SS18-225ENST00000585121 RPAP3Q9H6T3 665 aaPredicted RBP14.8□□□□□ -0.04
SS18-225ENST00000585121 KANSL2Q9H9L4 492 aa14.8□□□□□ -0.04
SS18-225ENST00000585121 HOXC10Q9NYD6 342 aa14.8□□□□□ -0.04
SS18-225ENST00000585121 RBPJLQ9UBG7 517 aa14.8□□□□□ -0.04
SS18-225ENST00000585121 SUPT16HQ9Y5B9 1047 aaKnown RBP14.8□□□□□ -0.04
SS18-225ENST00000585121 DDX60LQ5H9U9 1706 aaKnown RBP14.79□□□□□ -0.04
SS18-225ENST00000585121 CCL5P13501 91 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 ATP2B2Q01814 1243 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 MTFR1Q15390 333 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 ZMYM1Q5SVZ6 1142 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 B4GALNT3Q6L9W6 998 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 LPAR1Q92633 364 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 TANGO6Q9C0B7 1094 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 LNPKQ9C0E8 428 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 RNF208Q9H0X6 261 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 ZSWIM8A7E2V4 1837 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 SALL3Q9BXA9 1300 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 MYH7P12883 1935 aa14.79□□□□□ -0.04
SS18-225ENST00000585121 A0A1W2PRG0 241 aa14.78□□□□□ -0.04
SS18-225ENST00000585121 SLC3A2P08195 630 aaKnown RBP14.78□□□□□ -0.04
SS18-225ENST00000585121 ELNP15502 786 aa14.78□□□□□ -0.04
SS18-225ENST00000585121 SMC5Q8IY18 1101 aa14.78□□□□□ -0.04
SS18-225ENST00000585121 IFNL3Q8IZI9 196 aa14.78□□□□□ -0.04
SS18-225ENST00000585121 STK11IPQ8N1F8 1099 aa14.78□□□□□ -0.04
SS18-225ENST00000585121 SOCS4Q8WXH5 440 aa14.78□□□□□ -0.04
SS18-225ENST00000585121 NUDT12Q9BQG2 462 aa14.78□□□□□ -0.04
SS18-225ENST00000585121 TXNRD2Q9NNW7 524 aa14.78□□□□□ -0.04
SS18-225ENST00000585121 TMX2Q9Y320 296 aa14.78□□□□□ -0.04
SS18-225ENST00000585121 PDE4DIPQ5VU43 2346 aa14.78□□□□□ -0.04
SS18-225ENST00000585121 INHAP05111 366 aa14.77□□□□□ -0.04
SS18-225ENST00000585121 GJB1P08034 283 aa14.77□□□□□ -0.04
SS18-225ENST00000585121 COG2Q14746 738 aa14.77□□□□□ -0.04
SS18-225ENST00000585121 LBX2Q6XYB7 198 aa14.77□□□□□ -0.04
SS18-225ENST00000585121 PLEKHH3Q7Z736 793 aa14.77□□□□□ -0.04
SS18-225ENST00000585121 ZNF444Q8N0Y2 327 aaPredicted RBP14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms