RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 CAPN6Q9Y6Q1 641 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 PITPNM2Q9BZ72 1349 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 UPK3BL1B0FP48 263 aa5.43□□□□□ -1.54
NUP88-209ENST00000574855 UPK3BL2E5RIL1 263 aa5.43□□□□□ -1.54
NUP88-209ENST00000574855 RNASE1P07998 156 aaKnown RBP5.43□□□□□ -1.54
NUP88-209ENST00000574855 MLECQ14165 292 aa5.43□□□□□ -1.54
NUP88-209ENST00000574855 FBXL19Q6PCT2 694 aa5.43□□□□□ -1.54
NUP88-209ENST00000574855 REC114Q7Z4M0 266 aa5.43□□□□□ -1.54
NUP88-209ENST00000574855 SLFN12Q8IYM2 578 aa5.43□□□□□ -1.54
NUP88-209ENST00000574855 TMEM87AQ8NBN3 555 aa5.43□□□□□ -1.54
NUP88-209ENST00000574855 FMNL2Q96PY5 1086 aa5.43□□□□□ -1.54
NUP88-209ENST00000574855 KRTAP4-9Q9BYQ8 210 aa5.43□□□□□ -1.54
NUP88-209ENST00000574855 REV1Q9UBZ9 1251 aa5.43□□□□□ -1.54
NUP88-209ENST00000574855 SUPT16HQ9Y5B9 1047 aaKnown RBP5.43□□□□□ -1.54
NUP88-209ENST00000574855 GRIN3BO60391 1043 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 GREM1O60565 184 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 HTR3BO95264 441 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 GARTP22102 1010 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 CWF19L2Q2TBE0 894 aaKnown RBP5.42□□□□□ -1.54
NUP88-209ENST00000574855 THAP5Q7Z6K1 395 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 ATG4DQ86TL0 474 aaPredicted RBP5.42□□□□□ -1.54
NUP88-209ENST00000574855 DNAJB8Q8NHS0 232 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 PIWIL2Q8TC59 973 aaKnown RBP5.42□□□□□ -1.54
NUP88-209ENST00000574855 CYB5D2Q8WUJ1 264 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 ZNF296Q8WUU4 475 aaPredicted RBP5.42□□□□□ -1.54
NUP88-209ENST00000574855 UBE2FQ969M7 185 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 KCNQ5Q9NR82 932 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 SEMA3GQ9NS98 782 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 ADAMTS6Q9UKP5 1117 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 ST14Q9Y5Y6 855 aa5.42□□□□□ -1.54
NUP88-209ENST00000574855 H3BS24 57 aa5.41□□□□□ -1.54
NUP88-209ENST00000574855 TLR3O15455 904 aaKnown RBP5.41□□□□□ -1.54
NUP88-209ENST00000574855 TNNI2P48788 182 aa5.41□□□□□ -1.54
NUP88-209ENST00000574855 TNK2Q07912 1038 aa5.41□□□□□ -1.54
NUP88-209ENST00000574855 FBXO27Q8NI29 283 aa5.41□□□□□ -1.54
NUP88-209ENST00000574855 PPP1R13LQ8WUF5 828 aa5.41□□□□□ -1.54
NUP88-209ENST00000574855 LRRC3Q9BY71 257 aa5.41□□□□□ -1.54
NUP88-209ENST00000574855 ATP13A1Q9HD20 1204 aa5.41□□□□□ -1.54
NUP88-209ENST00000574855 PRDM7Q9NQW5 492 aa5.41□□□□□ -1.54
NUP88-209ENST00000574855 ZSWIM5Q9P217 1185 aa5.41□□□□□ -1.54
NUP88-209ENST00000574855 KLHL3Q9UH77 587 aa5.41□□□□□ -1.54
NUP88-209ENST00000574855 POLR3KQ9Y2Y1 108 aaPredicted RBP5.41□□□□□ -1.54
NUP88-209ENST00000574855 CHURC1-FNTBB4DL54 471 aa5.4□□□□□ -1.54
NUP88-209ENST00000574855 LRRN4CLQ8ND94 238 aa5.4□□□□□ -1.54
NUP88-209ENST00000574855 CCDC74BQ96LY2 380 aa5.4□□□□□ -1.54
NUP88-209ENST00000574855 BACH2Q9BYV9 841 aa5.4□□□□□ -1.54
NUP88-209ENST00000574855 CARS2Q9HA77 564 aaKnown RBP5.4□□□□□ -1.54
NUP88-209ENST00000574855 KCNH3Q9ULD8 1083 aa5.4□□□□□ -1.54
NUP88-209ENST00000574855 LOC105371045A0A1W2PR82 267 aa5.39□□□□□ -1.55
NUP88-209ENST00000574855 RBM47A0AV96 593 aaKnown RBP5.39□□□□□ -1.55
NUP88-209ENST00000574855 EIF5BO60841 1220 aaKnown RBP5.39□□□□□ -1.55
NUP88-209ENST00000574855 PAPLNO95428 1278 aa5.39□□□□□ -1.55
NUP88-209ENST00000574855 ZNF76P36508 570 aa5.39□□□□□ -1.55
NUP88-209ENST00000574855 CHMP4BP1P59074 171 aa5.39□□□□□ -1.55
NUP88-209ENST00000574855 TMPRSS7Q7RTY8 843 aa5.39□□□□□ -1.55
NUP88-209ENST00000574855 PHACTR4Q8IZ21 702 aa5.39□□□□□ -1.55
NUP88-209ENST00000574855 TRIT1Q9H3H1 467 aaKnown RBP5.39□□□□□ -1.55
NUP88-209ENST00000574855 BRMS1Q9HCU9 246 aa5.39□□□□□ -1.55
NUP88-209ENST00000574855 ADAMTS1Q9UHI8 967 aa5.39□□□□□ -1.55
NUP88-209ENST00000574855 PCDHB14Q9Y5E9 798 aa5.39□□□□□ -1.55
NUP88-209ENST00000574855 ATE1O95260 518 aa5.38□□□□□ -1.55
NUP88-209ENST00000574855 APOBRQ0VD83 1088 aa5.38□□□□□ -1.55
NUP88-209ENST00000574855 BAHD1Q8TBE0 780 aaPredicted RBP5.38□□□□□ -1.55
NUP88-209ENST00000574855 RNF141Q8WVD5 230 aa5.38□□□□□ -1.55
NUP88-209ENST00000574855 CCDC120Q96HB5 630 aa5.38□□□□□ -1.55
NUP88-209ENST00000574855 Q96M66 194 aa5.38□□□□□ -1.55
NUP88-209ENST00000574855 GPATCH2Q9NW75 528 aa5.38□□□□□ -1.55
NUP88-209ENST00000574855 SLC22A31A6NKX4 558 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 RGS13O14921 159 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 GBP1P32455 592 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 CRKP46108 304 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 ZNF165P49910 485 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 SEZ6Q53EL9 994 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 LDLRAD1Q5T700 205 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 REXO1Q8N1G1 1221 aaKnown RBP5.37□□□□□ -1.55
NUP88-209ENST00000574855 DTWD2Q8NBA8 298 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 FLAD1Q8NFF5 587 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 FAM168AQ92567 244 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 NKD1Q969G9 470 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 KREMEN1Q96MU8 473 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 KIF2CQ99661 725 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 SPON2Q9BUD6 331 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 NT5C1AQ9BXI3 368 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 ASPNQ9BXN1 380 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 KRTAP17-1Q9BYP8 105 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 GPR62Q9BZJ7 368 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 DUSP15Q9H1R2 295 aaPredicted RBP5.37□□□□□ -1.55
NUP88-209ENST00000574855 EHMT1Q9H9B1 1298 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 METTL5Q9NRN9 209 aaKnown RBP5.37□□□□□ -1.55
NUP88-209ENST00000574855 UBP1Q9NZI7 540 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 GMIPQ9P107 970 aa5.37□□□□□ -1.55
NUP88-209ENST00000574855 DNAJA2O60884 412 aa5.36□□□□□ -1.55
NUP88-209ENST00000574855 RAG1P15918 1043 aa5.36□□□□□ -1.55
NUP88-209ENST00000574855 TPP2P29144 1249 aaPredicted RBP5.36□□□□□ -1.55
NUP88-209ENST00000574855 MCM4P33991 863 aa5.36□□□□□ -1.55
NUP88-209ENST00000574855 AFMP43652 599 aa5.36□□□□□ -1.55
NUP88-209ENST00000574855 ARSHQ5FYA8 562 aa5.36□□□□□ -1.55
NUP88-209ENST00000574855 GK5Q6ZS86 529 aa5.36□□□□□ -1.55
NUP88-209ENST00000574855 KIAA0825Q8IV33 1275 aa5.36□□□□□ -1.55
NUP88-209ENST00000574855 TMEM40Q8WWA1 233 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms