RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 IL15P40933 162 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-212ENST00000574799 GNGT1P63211 74 aa10.84□□□□□ -0.67
CCDC40-212ENST00000574799 TUBB4BP68371 445 aa10.84□□□□□ -0.67
CCDC40-212ENST00000574799 FKBP15Q5T1M5 1219 aa10.84□□□□□ -0.67
CCDC40-212ENST00000574799 SMIM5Q71RC9 77 aa10.84□□□□□ -0.67
CCDC40-212ENST00000574799 IGSF22Q8N9C0 903 aa10.84□□□□□ -0.67
CCDC40-212ENST00000574799 LINC00301Q8NCQ3 95 aa10.84□□□□□ -0.67
CCDC40-212ENST00000574799 RIN2Q8WYP3 895 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-212ENST00000574799 NUP88Q99567 741 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-212ENST00000574799 TIAM2Q8IVF5 1701 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 UBR3Q6ZT12 1888 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 A0A1W2PQ27 194 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 A0A1W2PQ64 194 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 A0A1W2PQD8 194 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 GPTP24298 496 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 ZNF827Q17R98 1081 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 WASHC4Q2M389 1173 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 SPECC1Q5M775 1068 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 ACSBG1Q96GR2 724 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 CDC5LQ99459 802 aaKnown RBP10.83□□□□□ -0.68
CCDC40-212ENST00000574799 NBPF3Q9H094 633 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 MAST3O60307 1309 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 WTIPA6NIX2 430 aaPredicted RBP10.83□□□□□ -0.68
CCDC40-212ENST00000574799 PFKFB2O60825 505 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 IL6STP40189 918 aaPredicted RBP10.83□□□□□ -0.68
CCDC40-212ENST00000574799 MATR3P43243 847 aaKnown RBP eCLIP10.83□□□□□ -0.68
CCDC40-212ENST00000574799 LRCH2Q5VUJ6 765 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 MYSM1Q5VVJ2 828 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 SUSD4Q5VX71 490 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 CEP89Q96ST8 783 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 RTEL1Q9NZ71 1219 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 TBC1D2BQ9UPU7 963 aa10.83□□□□□ -0.68
CCDC40-212ENST00000574799 COL1A1P02452 1464 aaPredicted RBP10.83□□□□□ -0.68
CCDC40-212ENST00000574799 ATP2B2Q01814 1243 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 PPARDQ03181 441 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 L1RE1Q9UN81 338 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 ATRNO75882 1429 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 KIAA1551Q9HCM1 1747 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 MYH13Q9UKX3 1938 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 GOLGA6BA6NDN3 693 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 HNRNPH1P31943 449 aaKnown RBP10.82□□□□□ -0.68
CCDC40-212ENST00000574799 CRKLP46109 303 aaKnown RBP10.82□□□□□ -0.68
CCDC40-212ENST00000574799 CTSWP56202 376 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 ZMYM1Q5SVZ6 1142 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 C3orf67Q6ZVT6 689 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.82□□□□□ -0.68
CCDC40-212ENST00000574799 OSBP2Q969R2 916 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 MRPL44Q9H9J2 332 aaKnown RBP10.82□□□□□ -0.68
CCDC40-212ENST00000574799 PAG1Q9NWQ8 432 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 KLF18A0A0U1RQI7 1052 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 MAP2K7O14733 419 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 YEATS4O95619 227 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 TFRCP02786 760 aaKnown RBP10.82□□□□□ -0.68
CCDC40-212ENST00000574799 FGFR2P21802 821 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 MCAMP43121 646 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 MCMDC2Q4G0Z9 681 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 NCAPH2Q6IBW4 605 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 NFXL1Q6ZNB6 911 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 KIAA1328Q86T90 577 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 PCMTD1Q96MG8 357 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-212ENST00000574799 BPIFA3Q9BQP9 254 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 TEX13AQ9BXU3 409 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-212ENST00000574799 GJB4Q9NTQ9 266 aa10.82□□□□□ -0.68
CCDC40-212ENST00000574799 FRMD3A2A2Y4 597 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 ERVV-1B6SEH8 477 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 SNAP23O00161 211 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 ATP2C2O75185 946 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 NUTM2AQ8IVF1 878 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-212ENST00000574799 XAGE2Q96GT9 111 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 CAPS2Q9BXY5 557 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 PCDHA5Q9Y5H7 936 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 GOLIM4O00461 696 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 CHRM1P11229 460 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-212ENST00000574799 MICALCLQ6ZW33 695 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 SLC51AQ86UW1 340 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 TICAM2Q86XR7 235 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 LINC00116Q8NCU8 138 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 ATRIPQ8WXE1 791 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 CABS1Q96KC9 395 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 SCLT1Q96NL6 688 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 TACC3Q9Y6A5 838 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 ECM2O94769 699 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-212ENST00000574799 STARD3NLO95772 234 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 ITGA6P23229 1130 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 KCNQ4P56696 695 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 SUGP1Q8IWZ8 645 aaKnown RBP10.81□□□□□ -0.68
CCDC40-212ENST00000574799 ANKZF1Q9H8Y5 726 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 JADE2Q9NQC1 790 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 DONSONQ9NYP3 566 aa10.81□□□□□ -0.68
CCDC40-212ENST00000574799 NTSR2O95665 410 aa10.8□□□□□ -0.68
CCDC40-212ENST00000574799 NCAPHQ15003 741 aa10.8□□□□□ -0.68
CCDC40-212ENST00000574799 SAFBQ15424 915 aaKnown RBP eCLIP10.8□□□□□ -0.68
CCDC40-212ENST00000574799 CNPY4Q8N129 248 aa10.8□□□□□ -0.68
CCDC40-212ENST00000574799 SLF1Q9BQI6 1058 aa10.8□□□□□ -0.68
CCDC40-212ENST00000574799 AGXT2Q9BYV1 514 aa10.8□□□□□ -0.68
CCDC40-212ENST00000574799 UBXN6Q9BZV1 441 aa10.8□□□□□ -0.68
CCDC40-212ENST00000574799 ENC1O14682 589 aa10.8□□□□□ -0.68
CCDC40-212ENST00000574799 KIF1CO43896 1103 aaKnown RBP10.8□□□□□ -0.68
CCDC40-212ENST00000574799 CMA1P23946 247 aa10.8□□□□□ -0.68
CCDC40-212ENST00000574799 GBP2P32456 591 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms