RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 SLF2Q8IX21 1173 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 SRBD1Q8N5C6 995 aaKnown RBP16.16■□□□□ 0.18
VPS33B-208ENST00000574755 SHISA4Q96DD7 197 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 NAT10Q9H0A0 1025 aaKnown RBP16.16■□□□□ 0.18
VPS33B-208ENST00000574755 TTC12Q9H892 705 aaPredicted RBP16.16■□□□□ 0.18
VPS33B-208ENST00000574755 ATP6V0A2Q9Y487 856 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 GPR75-ASB3A0A0A6YYF3 556 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 RIMBP2O15034 1052 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 TSPY3P0CV98 308 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 TSPY8P0CW00 308 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 ATP2B1P20020 1258 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 PLCD1P51178 756 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 TEX11Q8IYF3 940 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 ZNF444Q8N0Y2 327 aaPredicted RBP16.16■□□□□ 0.18
VPS33B-208ENST00000574755 AKT1S1Q96B36 256 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 TIGD1Q96MW7 591 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 IL17RBQ9NRM6 502 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 PCDHB6Q9Y5E3 794 aa16.16■□□□□ 0.18
VPS33B-208ENST00000574755 SRGNP10124 158 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 PLCG2P16885 1265 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 KIF5BP33176 963 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 DGKHQ86XP1 1220 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 NRXN2Q9P2S2 1712 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 BAZ2BQ9UIF8 2168 aaKnown RBP16.15■□□□□ 0.18
VPS33B-208ENST00000574755 CEP131Q9UPN4 1083 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 GTF2IP78347 998 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 KIAA2012Q0VF49 1180 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 SLC44A5Q8NCS7 719 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 PNMA1Q8ND90 353 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 BRMS1Q9HCU9 246 aa16.15■□□□□ 0.18
VPS33B-208ENST00000574755 FAM237AA0A1B0GTK4 181 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 ZNF287Q9HBT7 754 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 USP17L3A6NCW0 530 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 USP17L4A6NCW7 530 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 NPR1P16066 1061 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 ZNF75DP51815 510 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 DPCR1Q3MIW9 517 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 USP17L1Q7RTZ2 530 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 PLA2G4DQ86XP0 818 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 DHX40Q8IX18 779 aaKnown RBP16.14■□□□□ 0.17
VPS33B-208ENST00000574755 DRC7Q8IY82 874 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 PIBF1Q8WXW3 757 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 FAM163AQ96GL9 167 aaPredicted RBP16.14■□□□□ 0.17
VPS33B-208ENST00000574755 KCNH3Q9ULD8 1083 aa16.14■□□□□ 0.17
VPS33B-208ENST00000574755 FLT1P17948 1338 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 FAM205AQ6ZU69 1335 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 MYH1P12882 1939 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 BIN1O00499 593 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 MMP10P09238 476 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 CCDC178Q5BJE1 867 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 SPECC1Q5M775 1068 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 ZC3H12CQ9C0D7 883 aaKnown RBP16.13■□□□□ 0.17
VPS33B-208ENST00000574755 COA1Q9GZY4 146 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 FBXO2Q9UK22 296 aaPredicted RBP16.13■□□□□ 0.17
VPS33B-208ENST00000574755 PARP3Q9Y6F1 533 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 DDX60LQ5H9U9 1706 aaKnown RBP16.13■□□□□ 0.17
VPS33B-208ENST00000574755 GAKO14976 1311 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 FAM205CA6NFA0 338 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 TPM3P06753 285 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 SCG2P13521 617 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 PTPREP23469 700 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 PDE6BP35913 854 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 OLFM4Q6UX06 510 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 AOPEPQ8N6M6 819 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 FLAD1Q8NFF5 587 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 NAP1L5Q96NT1 182 aaPredicted RBP16.13■□□□□ 0.17
VPS33B-208ENST00000574755 STX8Q9UNK0 236 aa16.13■□□□□ 0.17
VPS33B-208ENST00000574755 RASA1P20936 1047 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 ALDH1B1P30837 517 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 RHBDL3P58872 404 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 EARS2Q5JPH6 523 aaKnown RBP16.12■□□□□ 0.17
VPS33B-208ENST00000574755 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.12■□□□□ 0.17
VPS33B-208ENST00000574755 ANKS1AQ92625 1134 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 FAM13BQ9NYF5 915 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 COL11A2P13942 1736 aaPredicted RBP16.12■□□□□ 0.17
VPS33B-208ENST00000574755 TRIM75PA6NK02 468 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 NLRP12P59046 1061 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 GRIN1Q05586 938 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 PFKFB3Q16875 520 aaPredicted RBP16.12■□□□□ 0.17
VPS33B-208ENST00000574755 SARM1Q6SZW1 724 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 DPP8Q6V1X1 898 aaPredicted RBP16.12■□□□□ 0.17
VPS33B-208ENST00000574755 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.12■□□□□ 0.17
VPS33B-208ENST00000574755 CNNM3Q8NE01 707 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 TMX4Q9H1E5 349 aaPredicted RBP16.12■□□□□ 0.17
VPS33B-208ENST00000574755 TCP11L1Q9NUJ3 509 aa16.12■□□□□ 0.17
VPS33B-208ENST00000574755 OFD1O75665 1012 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 NLRP5P59047 1200 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 LONRF3Q496Y0 759 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 C16orf86Q6ZW13 317 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 SRPRBQ9Y5M8 271 aaKnown RBP16.11■□□□□ 0.17
VPS33B-208ENST00000574755 FOCADQ5VW36 1801 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 F8W031 263 aaPredicted RBP16.11■□□□□ 0.17
VPS33B-208ENST00000574755 CDK8P49336 464 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 PNOCQ13519 176 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 NPY5RQ15761 445 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 MSL1Q68DK7 614 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 KRBA2Q6ZNG9 492 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 MTMR7Q9Y216 660 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 DAGLAQ9Y4D2 1042 aa16.11■□□□□ 0.17
VPS33B-208ENST00000574755 ISM2Q6H9L7 571 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms