RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-217	ENST00000574022	GDF6	Q6KF10	455 aa	Predicted RBP	2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	FOXR1	Q6PIV2	292 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	SLC4A10	Q6U841	1118 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	KSR2	Q6VAB6	950 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	C12orf40	Q86WS4	652 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	PASD1	Q8IV76	773 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	PHACTR4	Q8IZ21	702 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	CACTIN-AS1	Q8N1I8	211 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	SAMD3	Q8N6K7	520 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	TTC8	Q8TAM2	541 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	SLC7A3	Q8WY07	619 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	GTPBP3	Q969Y2	492 aa	Known RBP	2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	GMCL1	Q96IK5	515 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	MPHOSPH6	Q99547	160 aa	Known RBP	2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	SMAD5	Q99717	465 aa	Known RBP	2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	YIPF4	Q9BSR8	244 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	CCDC8	Q9H0W5	538 aa	Predicted RBP	2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	CCDC86	Q9H6F5	360 aa	Known RBP	2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	AASDHPPT	Q9NRN7	309 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	KRT82	Q9NSB4	513 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	FAM86C1	Q9NVL1	165 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	GOLGA6A	Q9NYA3	693 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	SUSD2	Q9UGT4	822 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	NDOR1	Q9UHB4	597 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	SFMBT1	Q9UHJ3	866 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	ADAM30	Q9UKF2	790 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	SLC6A14	Q9UN76	642 aa		2.74	□□□□□ -1.97
CHD3-217	ENST00000574022	PRAMEF27	A3QJZ7	478 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	HMGB1P1	B2RPK0	211 aa	Predicted RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	GPR39	O43194	453 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	ZNF862	O60290	1169 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	OPA1	O60313	960 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	DNAJC8	O75937	253 aa	Predicted RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	ECEL1	O95672	775 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	LDHA	P00338	332 aa	Known RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	ASL	P04424	464 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	EPHX1	P07099	455 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	SLFN14	P0C7P3	912 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	LIG1	P18858	919 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	POU3F2	P20265	443 aa	Predicted RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	MAOB	P27338	520 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	POLR2B	P30876	1174 aa	Known RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	FLT3	P36888	993 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	YARS	P54577	528 aa	Known RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	PCBP4	P57723	403 aa	Known RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	PIP4K2B	P78356	416 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	PDE3A	Q14432	1141 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	RALBP1	Q15311	655 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	ZNF468	Q5VIY5	522 aa	Predicted RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	FAM117B	Q6P1L5	589 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	LHFPL2	Q6ZUX7	228 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	ADAT2	Q7Z6V5	191 aa	Known RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	ZBTB46	Q86UZ6	589 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	TICAM2	Q86XR7	235 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	MCAT	Q8IVS2	390 aa	Known RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	TMEM192	Q8IY95	271 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	CCDC155	Q8N6L0	562 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	FAM13C	Q8NE31	585 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	TTC9	Q92623	222 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	USP7	Q93009	1102 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	CHMP4C	Q96CF2	233 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	ACSF2	Q96CM8	615 aa	Predicted RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	HOOK2	Q96ED9	719 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	WDR89	Q96FK6	387 aa	Predicted RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	SLC6A18	Q96N87	628 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	TTC1	Q99614	292 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	HAUS7	Q99871	368 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	WNT10A	Q9GZT5	417 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	UBA5	Q9GZZ9	404 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	MTFR1L	Q9H019	292 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	PUS7L	Q9H0K6	701 aa	Known RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	CDH19	Q9H159	772 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	TRIM39	Q9HCM9	518 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	PICK1	Q9NRD5	415 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	FRRS1L	Q9P0K9	344 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	SUCO	Q9UBS9	1254 aa	Known RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	NOB1	Q9ULX3	412 aa	Known RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	SPEF1	Q9Y4P9	236 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	TNPO3	Q9Y5L0	923 aa	Known RBP	2.73	□□□□□ -1.97
CHD3-217	ENST00000574022	CSAD	Q9Y600	493 aa		2.73	□□□□□ -1.97
CHD3-217	ENST00000574022		A0A0G2JS52	829 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	FAM83G	A6ND36	823 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	FAM187A	A6NFU0	413 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	SPDYE3	A6NKU9	549 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	NOP56	O00567	594 aa	Known RBP	2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	RGS13	O14921	159 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	KPNA6	O60684	536 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	EFCAB14	O75071	495 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	CLEC3A	O75596	197 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	PPM1B	O75688	479 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	RGS9	O75916	674 aa	Predicted RBP	2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	AVP	P01185	164 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	PYGM	P11217	842 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	BMP4	P12644	408 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	GBP1	P32455	592 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	ADH7	P40394	386 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	GRIA2	P42262	883 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	GABRE	P78334	506 aa		2.72	□□□□□ -1.97
CHD3-217	ENST00000574022	TMPRSS15	P98073	1019 aa		2.72	□□□□□ -1.97

Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms