RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 IFT57Q9NWB7 429 aa11.9□□□□□ -0.5
CIITA-208ENST00000572665 GPRC5DQ9NZD1 345 aa11.9□□□□□ -0.5
CIITA-208ENST00000572665 DDX60Q8IY21 1712 aaKnown RBP11.89□□□□□ -0.51
CIITA-208ENST00000572665 TGFBR3LH3BV60 316 aa11.89□□□□□ -0.51
CIITA-208ENST00000572665 DDX58O95786 925 aaKnown RBP11.89□□□□□ -0.51
CIITA-208ENST00000572665 EPS15P42566 896 aa11.89□□□□□ -0.51
CIITA-208ENST00000572665 VEGFBP49765 207 aa11.89□□□□□ -0.51
CIITA-208ENST00000572665 TRIM28Q13263 835 aaKnown RBP11.89□□□□□ -0.51
CIITA-208ENST00000572665 SF3B3Q15393 1217 aaKnown RBP11.89□□□□□ -0.51
CIITA-208ENST00000572665 DNAJC14Q6Y2X3 702 aaPredicted RBP11.89□□□□□ -0.51
CIITA-208ENST00000572665 KIFC2Q96AC6 838 aa11.89□□□□□ -0.51
CIITA-208ENST00000572665 HSH2DQ96JZ2 352 aa11.89□□□□□ -0.51
CIITA-208ENST00000572665 ISCA1Q9BUE6 129 aa11.89□□□□□ -0.51
CIITA-208ENST00000572665 GPAMQ9HCL2 828 aa11.89□□□□□ -0.51
CIITA-208ENST00000572665 DCTN4Q9UJW0 460 aa11.89□□□□□ -0.51
CIITA-208ENST00000572665 LRRC37AA6NMS7 1700 aa11.89□□□□□ -0.51
CIITA-208ENST00000572665 COL4A5P29400 1685 aa11.88□□□□□ -0.51
CIITA-208ENST00000572665 H7C1D1 291 aa11.88□□□□□ -0.51
CIITA-208ENST00000572665 MAPK1P28482 360 aa11.88□□□□□ -0.51
CIITA-208ENST00000572665 CXCL9Q07325 125 aa11.88□□□□□ -0.51
CIITA-208ENST00000572665 KRT24Q2M2I5 525 aa11.88□□□□□ -0.51
CIITA-208ENST00000572665 ARSJQ5FYB0 599 aaPredicted RBP11.88□□□□□ -0.51
CIITA-208ENST00000572665 ZNF280CQ8ND82 737 aa11.88□□□□□ -0.51
CIITA-208ENST00000572665 CRISPLD1Q9H336 500 aa11.88□□□□□ -0.51
CIITA-208ENST00000572665 MBIPQ9NS73 344 aa11.88□□□□□ -0.51
CIITA-208ENST00000572665 LTBP1Q14766 1721 aa11.88□□□□□ -0.51
CIITA-208ENST00000572665 WDR33Q9C0J8 1336 aaKnown RBP11.87□□□□□ -0.51
CIITA-208ENST00000572665 FZD6O60353 706 aa11.87□□□□□ -0.51
CIITA-208ENST00000572665 F11P03951 625 aa11.87□□□□□ -0.51
CIITA-208ENST00000572665 CCDC30Q5VVM6 783 aa11.87□□□□□ -0.51
CIITA-208ENST00000572665 IER5Q5VY09 327 aa11.87□□□□□ -0.51
CIITA-208ENST00000572665 ATCAYQ86WG3 371 aa11.87□□□□□ -0.51
CIITA-208ENST00000572665 TREML1Q86YW5 311 aa11.87□□□□□ -0.51
CIITA-208ENST00000572665 FAM89AQ96GI7 184 aa11.87□□□□□ -0.51
CIITA-208ENST00000572665 TRIM47Q96LD4 638 aa11.87□□□□□ -0.51
CIITA-208ENST00000572665 ANKIB1Q9P2G1 1089 aa11.87□□□□□ -0.51
CIITA-208ENST00000572665 NSFL1CQ9UNZ2 370 aaKnown RBP11.87□□□□□ -0.51
CIITA-208ENST00000572665 TAF1P21675 1872 aa11.87□□□□□ -0.51
CIITA-208ENST00000572665 A0A1W2PNR3 127 aa11.86□□□□□ -0.51
CIITA-208ENST00000572665 IRS4O14654 1257 aaPredicted RBP11.86□□□□□ -0.51
CIITA-208ENST00000572665 APAF1O14727 1248 aa11.86□□□□□ -0.51
CIITA-208ENST00000572665 FOXN1O15353 648 aa11.86□□□□□ -0.51
CIITA-208ENST00000572665 ZAP70P43403 619 aa11.86□□□□□ -0.51
CIITA-208ENST00000572665 GMPSP49915 693 aaPredicted RBP11.86□□□□□ -0.51
CIITA-208ENST00000572665 PTSQ03393 145 aa11.86□□□□□ -0.51
CIITA-208ENST00000572665 ZBTB38Q8NAP3 1195 aaPredicted RBP11.86□□□□□ -0.51
CIITA-208ENST00000572665 CCDC191Q8NCU4 936 aa11.86□□□□□ -0.51
CIITA-208ENST00000572665 GAS2L1Q99501 681 aaPredicted RBP11.86□□□□□ -0.51
CIITA-208ENST00000572665 RUBCNLQ9H714 662 aa11.86□□□□□ -0.51
CIITA-208ENST00000572665 GMPR2Q9P2T1 348 aaKnown RBP11.86□□□□□ -0.51
CIITA-208ENST00000572665 DMGDHQ9UI17 866 aaKnown RBP11.86□□□□□ -0.51
CIITA-208ENST00000572665 RAD17O75943 681 aa11.85□□□□□ -0.51
CIITA-208ENST00000572665 ZNF853P0CG23 659 aa11.85□□□□□ -0.51
CIITA-208ENST00000572665 RPS12P25398 132 aaKnown RBP11.85□□□□□ -0.51
CIITA-208ENST00000572665 RPS8P62241 208 aaKnown RBP11.85□□□□□ -0.51
CIITA-208ENST00000572665 AAMPQ13685 434 aa11.85□□□□□ -0.51
CIITA-208ENST00000572665 CCDC152Q4G0S7 254 aa11.85□□□□□ -0.51
CIITA-208ENST00000572665 LRRC69Q6ZNQ3 347 aa11.85□□□□□ -0.51
CIITA-208ENST00000572665 CDC37L1Q7L3B6 337 aa11.85□□□□□ -0.51
CIITA-208ENST00000572665 DPF2Q92785 391 aa11.85□□□□□ -0.51
CIITA-208ENST00000572665 ZC3H12CQ9C0D7 883 aaKnown RBP11.85□□□□□ -0.51
CIITA-208ENST00000572665 CNOT7Q9UIV1 285 aaKnown RBP11.85□□□□□ -0.51
CIITA-208ENST00000572665 SLC35F4A4IF30 521 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 LCE2BO14633 110 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 NDUFB5O43674 189 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 PDE8AO60658 829 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 MICAL2O94851 1124 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 MAP2K2P36507 400 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 NEXNQ0ZGT2 675 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 Q6ZNB5 142 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 CELF1Q92879 486 aaKnown RBP11.84□□□□□ -0.51
CIITA-208ENST00000572665 HHIPL1Q96JK4 782 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 CAPNS2Q96L46 248 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 STK31Q9BXU1 1019 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 NEUROD4Q9HD90 331 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 CWC25Q9NXE8 425 aaPredicted RBP11.84□□□□□ -0.51
CIITA-208ENST00000572665 PGAP2Q9UHJ9 254 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 BRPF3Q9ULD4 1205 aa11.84□□□□□ -0.51
CIITA-208ENST00000572665 CA12O43570 354 aa11.83□□□□□ -0.52
CIITA-208ENST00000572665 CELF2O95319 508 aaKnown RBP11.83□□□□□ -0.52
CIITA-208ENST00000572665 PCCAP05165 728 aaPredicted RBP11.83□□□□□ -0.52
CIITA-208ENST00000572665 ERCC3P19447 782 aa11.83□□□□□ -0.52
CIITA-208ENST00000572665 PGBD3Q8N328 593 aa11.83□□□□□ -0.52
CIITA-208ENST00000572665 ASB16Q96NS5 453 aa11.83□□□□□ -0.52
CIITA-208ENST00000572665 GPR101Q96P66 508 aaPredicted RBP11.83□□□□□ -0.52
CIITA-208ENST00000572665 MYD88Q99836 296 aa11.83□□□□□ -0.52
CIITA-208ENST00000572665 THSD7BQ9C0I4 1608 aa11.82□□□□□ -0.52
CIITA-208ENST00000572665 MYH3P11055 1940 aa11.82□□□□□ -0.52
CIITA-208ENST00000572665 ELL2O00472 640 aaPredicted RBP11.82□□□□□ -0.52
CIITA-208ENST00000572665 BTLAQ7Z6A9 289 aa11.82□□□□□ -0.52
CIITA-208ENST00000572665 CDC5LQ99459 802 aaKnown RBP11.82□□□□□ -0.52
CIITA-208ENST00000572665 METTL22Q9BUU2 404 aaPredicted RBP11.82□□□□□ -0.52
CIITA-208ENST00000572665 RBCK1Q9BYM8 510 aa11.82□□□□□ -0.52
CIITA-208ENST00000572665 DUOX1Q9NRD9 1551 aa11.82□□□□□ -0.52
CIITA-208ENST00000572665 CACNA1FO60840 1977 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 YDJCA8MPS7 323 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 TRAF5O00463 557 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 ECE2O60344 883 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 MZF1P28698 734 aaPredicted RBP11.81□□□□□ -0.52
CIITA-208ENST00000572665 IDH3AP50213 366 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms