RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 USP17L13C9JLJ4 530 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 USP17L11C9JVI0 530 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 USP17L18D6R9N7 530 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 USP17L22D6RA61 530 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 USP17L17D6RBQ6 530 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 USP17L19D6RCP7 530 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 USP17L20D6RJB6 530 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 GLRX3O76003 335 aaKnown RBP11.74□□□□□ -0.53
CIITA-207ENST00000571545 INHAP05111 366 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 GABPAQ06546 454 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 USP17L24Q0WX57 530 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 MTFR1Q15390 333 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 TMEM179Q6ZVK1 233 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 NUDT12Q9BQG2 462 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 CWC22Q9HCG8 908 aaKnown RBP11.74□□□□□ -0.53
CIITA-207ENST00000571545 DCP1AQ9NPI6 582 aaPredicted RBP11.74□□□□□ -0.53
CIITA-207ENST00000571545 ECHDC1Q9NTX5 307 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 CENPFP49454 3210 aa11.74□□□□□ -0.53
CIITA-207ENST00000571545 XRCC5P13010 732 aaKnown RBP11.73□□□□□ -0.53
CIITA-207ENST00000571545 SHMT1P34896 483 aa11.73□□□□□ -0.53
CIITA-207ENST00000571545 PLCD1P51178 756 aa11.73□□□□□ -0.53
CIITA-207ENST00000571545 ERVK-9P63128 1117 aa11.73□□□□□ -0.53
CIITA-207ENST00000571545 ERVK-24P63145 666 aa11.73□□□□□ -0.53
CIITA-207ENST00000571545 LCORLQ8N3X6 602 aa11.73□□□□□ -0.53
CIITA-207ENST00000571545 U2AF1L4Q8WU68 220 aaKnown RBP11.73□□□□□ -0.53
CIITA-207ENST00000571545 CCDC17Q96LX7 622 aa11.73□□□□□ -0.53
CIITA-207ENST00000571545 BCL11AQ9H165 835 aa11.73□□□□□ -0.53
CIITA-207ENST00000571545 ARHGEF10LQ9HCE6 1279 aa11.73□□□□□ -0.53
CIITA-207ENST00000571545 RABGAP1Q9Y3P9 1069 aa11.73□□□□□ -0.53
CIITA-207ENST00000571545 BAZ2AQ9UIF9 1905 aaKnown RBP11.72□□□□□ -0.53
CIITA-207ENST00000571545 MPHOSPH10O00566 681 aaKnown RBP11.72□□□□□ -0.53
CIITA-207ENST00000571545 ERC2O15083 957 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 FARP2O94887 1054 aaPredicted RBP11.72□□□□□ -0.53
CIITA-207ENST00000571545 MBD4O95243 580 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 SGPL1O95470 568 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 ZFYP08048 801 aaPredicted RBP11.72□□□□□ -0.53
CIITA-207ENST00000571545 ELNP15502 786 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 VCAM1P19320 739 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 C20orf194Q5TEA3 1177 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 LBX2Q6XYB7 198 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 SDR42E1Q8WUS8 393 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 LPAR1Q92633 364 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 SHISA4Q96DD7 197 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 P2RX7Q99572 595 aaKnown RBP11.72□□□□□ -0.53
CIITA-207ENST00000571545 UNC93B1Q9H1C4 597 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 DCTPP1Q9H773 170 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 PAK6Q9NQU5 681 aaPredicted RBP11.72□□□□□ -0.53
CIITA-207ENST00000571545 EMILIN3Q9NT22 766 aa11.72□□□□□ -0.53
CIITA-207ENST00000571545 ARPP21Q9UBL0 812 aaPredicted RBP11.72□□□□□ -0.53
CIITA-207ENST00000571545 ZBTB47Q9UFB7 747 aaPredicted RBP11.72□□□□□ -0.53
CIITA-207ENST00000571545 TTC41PQ6P2S7 1318 aa11.71□□□□□ -0.53
CIITA-207ENST00000571545 RPTORQ8N122 1335 aa11.71□□□□□ -0.53
CIITA-207ENST00000571545 RGS2P41220 211 aa11.71□□□□□ -0.53
CIITA-207ENST00000571545 JAG1P78504 1218 aa11.71□□□□□ -0.53
CIITA-207ENST00000571545 ZYXQ15942 572 aaKnown RBP11.71□□□□□ -0.53
CIITA-207ENST00000571545 ANKLE1Q8NAG6 615 aa11.71□□□□□ -0.53
CIITA-207ENST00000571545 APBA2Q99767 749 aa11.71□□□□□ -0.53
CIITA-207ENST00000571545 PAGR1Q9BTK6 254 aa11.71□□□□□ -0.53
CIITA-207ENST00000571545 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.71□□□□□ -0.53
CIITA-207ENST00000571545 ARMT1Q9H993 441 aa11.71□□□□□ -0.53
CIITA-207ENST00000571545 HMX1Q9NP08 348 aaPredicted RBP11.71□□□□□ -0.53
CIITA-207ENST00000571545 IVNS1ABPQ9Y6Y0 642 aa11.71□□□□□ -0.53
CIITA-207ENST00000571545 PLXNB2O15031 1838 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 TFRCP02786 760 aaKnown RBP11.7□□□□□ -0.54
CIITA-207ENST00000571545 ZKSCAN1P17029 563 aaPredicted RBP11.7□□□□□ -0.54
CIITA-207ENST00000571545 GNAT2P19087 354 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 ICA1Q05084 483 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 SEPT2Q15019 361 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 SHROOM1Q2M3G4 852 aaPredicted RBP11.7□□□□□ -0.54
CIITA-207ENST00000571545 GIMAP6Q6P9H5 292 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 CATSPERGQ6ZRH7 1159 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 GPR142Q7Z601 462 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 PLEKHH3Q7Z736 793 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 MB21D1Q8N884 522 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 KBTBD3Q8NAB2 608 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 EDC3Q96F86 508 aaKnown RBP11.7□□□□□ -0.54
CIITA-207ENST00000571545 ZNF287Q9HBT7 754 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 HOXC10Q9NYD6 342 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 GJD2Q9UKL4 321 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 NR2E3Q9Y5X4 410 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 SLC4A4Q9Y6R1 1079 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 ZNF236Q9UL36 1845 aa11.7□□□□□ -0.54
CIITA-207ENST00000571545 AAMPQ13685 434 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 C12orf60Q5U649 245 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 C16orf86Q6ZW13 317 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 UBE2Q1Q7Z7E8 422 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 APPBP2Q92624 585 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 DPF3Q92784 378 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 DEFB118Q96PH6 123 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 TANGO6Q9C0B7 1094 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 CRISPLD2Q9H0B8 497 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 RPAP3Q9H6T3 665 aaPredicted RBP11.69□□□□□ -0.54
CIITA-207ENST00000571545 TXNRD2Q9NNW7 524 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 PCDH10Q9P2E7 1040 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 RBPJLQ9UBG7 517 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 A0A0G2JMZ2 1700 aa11.69□□□□□ -0.54
CIITA-207ENST00000571545 SLC15A5A6NIM6 579 aa11.68□□□□□ -0.54
CIITA-207ENST00000571545 GUCY1A2P33402 732 aa11.68□□□□□ -0.54
CIITA-207ENST00000571545 RRP1P56182 461 aaKnown RBP11.68□□□□□ -0.54
CIITA-207ENST00000571545 COG2Q14746 738 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms