RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 BAG3O95817 575 aa13.66□□□□□ -0.22
VPS53-207ENST00000570510 CLTBP09497 229 aa13.66□□□□□ -0.22
VPS53-207ENST00000570510 TIMM10P62072 90 aa13.66□□□□□ -0.22
VPS53-207ENST00000570510 TLE2Q04725 743 aa13.66□□□□□ -0.22
VPS53-207ENST00000570510 FPGSQ05932 587 aa13.66□□□□□ -0.22
VPS53-207ENST00000570510 MVPQ14764 893 aaKnown RBP13.66□□□□□ -0.22
VPS53-207ENST00000570510 ATF7IPQ6VMQ6 1270 aa13.66□□□□□ -0.22
VPS53-207ENST00000570510 FOXP4Q8IVH2 680 aaPredicted RBP13.66□□□□□ -0.22
VPS53-207ENST00000570510 TSPYL2Q9H2G4 693 aaPredicted RBP13.66□□□□□ -0.22
VPS53-207ENST00000570510 SLC5A4Q9NY91 659 aa13.66□□□□□ -0.22
VPS53-207ENST00000570510 LRP2BPQ9P2M1 347 aa13.66□□□□□ -0.22
VPS53-207ENST00000570510 AKAP2Q9Y2D5 859 aa13.66□□□□□ -0.22
VPS53-207ENST00000570510 MAST2Q6P0Q8 1798 aa13.66□□□□□ -0.22
VPS53-207ENST00000570510 PTPRCP08575 1304 aa13.65□□□□□ -0.22
VPS53-207ENST00000570510 HOXC6P09630 235 aa13.65□□□□□ -0.22
VPS53-207ENST00000570510 UBTFL1P0CB47 393 aaPredicted RBP13.65□□□□□ -0.22
VPS53-207ENST00000570510 IGFBP4P22692 258 aa13.65□□□□□ -0.22
VPS53-207ENST00000570510 CCDC85BQ15834 202 aaPredicted RBP13.65□□□□□ -0.22
VPS53-207ENST00000570510 NEUROD6Q96NK8 337 aa13.65□□□□□ -0.22
VPS53-207ENST00000570510 EMILIN3Q9NT22 766 aa13.65□□□□□ -0.22
VPS53-207ENST00000570510 TMEM39AQ9NV64 488 aa13.65□□□□□ -0.22
VPS53-207ENST00000570510 HDAC5Q9UQL6 1122 aa13.65□□□□□ -0.22
VPS53-207ENST00000570510 HCN4Q9Y3Q4 1203 aa13.65□□□□□ -0.22
VPS53-207ENST00000570510 SEPT4O43236 478 aa13.64□□□□□ -0.23
VPS53-207ENST00000570510 HLA-DOAP06340 250 aa13.64□□□□□ -0.23
VPS53-207ENST00000570510 CYBAP13498 195 aa13.64□□□□□ -0.23
VPS53-207ENST00000570510 PLCG2P16885 1265 aa13.64□□□□□ -0.23
VPS53-207ENST00000570510 USP14P54578 494 aa13.64□□□□□ -0.23
VPS53-207ENST00000570510 GRB14Q14449 540 aa13.64□□□□□ -0.23
VPS53-207ENST00000570510 CCDC174Q6PII3 467 aa13.64□□□□□ -0.23
VPS53-207ENST00000570510 TRPV1Q8NER1 839 aa13.64□□□□□ -0.23
VPS53-207ENST00000570510 NPLOC4Q8TAT6 608 aa13.64□□□□□ -0.23
VPS53-207ENST00000570510 SH3RF3Q8TEJ3 882 aaPredicted RBP13.64□□□□□ -0.23
VPS53-207ENST00000570510 NSUN4Q96CB9 384 aaKnown RBP13.64□□□□□ -0.23
VPS53-207ENST00000570510 ZBTB21Q9ULJ3 1066 aa13.64□□□□□ -0.23
VPS53-207ENST00000570510 PQBP1O60828 265 aaKnown RBP13.63□□□□□ -0.23
VPS53-207ENST00000570510 HOXD11P31277 338 aaPredicted RBP13.63□□□□□ -0.23
VPS53-207ENST00000570510 SNX17Q15036 470 aa13.63□□□□□ -0.23
VPS53-207ENST00000570510 LRRC41Q15345 812 aa13.63□□□□□ -0.23
VPS53-207ENST00000570510 AKNAD1Q5T1N1 836 aa13.63□□□□□ -0.23
VPS53-207ENST00000570510 C1orf53Q5VUE5 145 aa13.63□□□□□ -0.23
VPS53-207ENST00000570510 TBC1D9Q6ZT07 1266 aa13.63□□□□□ -0.23
VPS53-207ENST00000570510 MAPKAPK5Q8IW41 473 aa13.63□□□□□ -0.23
VPS53-207ENST00000570510 SPATA5Q8NB90 893 aa13.63□□□□□ -0.23
VPS53-207ENST00000570510 TGFBRAP1Q8WUH2 860 aa13.63□□□□□ -0.23
VPS53-207ENST00000570510 XAGE2Q96GT9 111 aa13.63□□□□□ -0.23
VPS53-207ENST00000570510 LTBP2Q14767 1821 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 A0A1B0GUL7 405 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 DCDC2CA8MYV0 355 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 ZBTB22O15209 634 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 STRNO43815 780 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 ADORA2AP29274 412 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 RAB3GAP1Q15042 981 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 OLFML2BQ68BL8 750 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 POTEEQ6S8J3 1075 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 RNF180Q86T96 592 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 PRDM12Q9H4Q4 367 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 AATFQ9NY61 560 aaKnown RBP eCLIP13.62□□□□□ -0.23
VPS53-207ENST00000570510 PALD1Q9ULE6 856 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 PA2G4Q9UQ80 394 aaKnown RBP13.62□□□□□ -0.23
VPS53-207ENST00000570510 ATAD5Q96QE3 1844 aa13.62□□□□□ -0.23
VPS53-207ENST00000570510 CNMDO75829 334 aa13.61□□□□□ -0.23
VPS53-207ENST00000570510 GH2P01242 217 aa13.61□□□□□ -0.23
VPS53-207ENST00000570510 RARBP10826 455 aa13.61□□□□□ -0.23
VPS53-207ENST00000570510 EPHB4P54760 987 aa13.61□□□□□ -0.23
VPS53-207ENST00000570510 JAG1P78504 1218 aa13.61□□□□□ -0.23
VPS53-207ENST00000570510 NAA16Q6N069 864 aaPredicted RBP13.61□□□□□ -0.23
VPS53-207ENST00000570510 CATSPERGQ6ZRH7 1159 aa13.61□□□□□ -0.23
VPS53-207ENST00000570510 MRPL50Q8N5N7 158 aaKnown RBP13.61□□□□□ -0.23
VPS53-207ENST00000570510 XPNPEP3Q9NQH7 507 aa13.61□□□□□ -0.23
VPS53-207ENST00000570510 HMG20BQ9P0W2 317 aa13.61□□□□□ -0.23
VPS53-207ENST00000570510 KIAA0355O15063 1070 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 ITGB8P26012 769 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 PLS1Q14651 629 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 AAK1Q2M2I8 961 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 SHROOM1Q2M3G4 852 aaPredicted RBP13.6□□□□□ -0.23
VPS53-207ENST00000570510 FAM47AQ5JRC9 791 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 PRAMEF19Q5SWL8 479 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 SLC44A5Q8NCS7 719 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 ZNF384Q8TF68 577 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 MRS2Q9HD23 443 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 CABP5Q9NP86 173 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 BTBD7Q9P203 1132 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 SAP30BPQ9UHR5 308 aaKnown RBP13.6□□□□□ -0.23
VPS53-207ENST00000570510 MSRAQ9UJ68 235 aa13.6□□□□□ -0.23
VPS53-207ENST00000570510 APBB1O00213 710 aa13.59□□□□□ -0.23
VPS53-207ENST00000570510 VCAM1P19320 739 aa13.59□□□□□ -0.23
VPS53-207ENST00000570510 SKIV2LQ15477 1246 aaKnown RBP13.59□□□□□ -0.23
VPS53-207ENST00000570510 CCDC184Q52MB2 194 aa13.59□□□□□ -0.23
VPS53-207ENST00000570510 PI16Q6UXB8 463 aa13.59□□□□□ -0.23
VPS53-207ENST00000570510 C12orf42Q96LP6 360 aa13.59□□□□□ -0.23
VPS53-207ENST00000570510 RPAP3Q9H6T3 665 aaPredicted RBP13.59□□□□□ -0.23
VPS53-207ENST00000570510 DNAJC18Q9H819 358 aa13.59□□□□□ -0.23
VPS53-207ENST00000570510 HOXC10Q9NYD6 342 aa13.59□□□□□ -0.23
VPS53-207ENST00000570510 FRMPD3Q5JV73 1810 aa13.59□□□□□ -0.23
VPS53-207ENST00000570510 FLT1P17948 1338 aa13.59□□□□□ -0.23
VPS53-207ENST00000570510 TFCP2Q12800 502 aa13.58□□□□□ -0.24
VPS53-207ENST00000570510 PPIGQ13427 754 aaKnown RBP eCLIP13.58□□□□□ -0.244e-7■■■□□ 15.6
VPS53-207ENST00000570510 LBX2Q6XYB7 198 aa13.58□□□□□ -0.24
VPS53-207ENST00000570510 NCAPG2Q86XI2 1143 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms