RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	ANKRD13C	Q8N6S4	541 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	MRPL44	Q9H9J2	332 aa	Known RBP	12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	PCDHB6	Q9Y5E3	794 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	RIMBP3C	A6NJZ7	1639 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	RIMBP3B	A6NNM3	1639 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	RIMBP3	Q9UFD9	1639 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	SRGAP2	O75044	1071 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	BMP15	O95972	392 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	VSNL1	P62760	191 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	MAP3K9	P80192	1104 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	SRL	Q86TD4	932 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	SIRT1	Q96EB6	747 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	EPSTI1	Q96J88	318 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	TMOD3	Q9NYL9	352 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	UQCRFS1P1	P0C7P4	283 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	PRR29	P0C7W0	189 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	CDC25A	P30304	524 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	PRPF4B	Q13523	1007 aa	Known RBP	12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	ICE2	Q659A1	982 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	GSPT2	Q8IYD1	628 aa	Known RBP	12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	BPIFA3	Q9BQP9	254 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	SH3TC1	Q8TE82	1336 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	KCNJ18	B7U540	433 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	ATP2B2	Q01814	1243 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	KCNJ12	Q14500	433 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	CCDC40	Q4G0X9	1142 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	REXO1L1P	Q8IX06	675 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	CSGALNACT2	Q8N6G5	542 aa		12.81	□□□□□ -0.36
CLN3-238	ENST00000569430	NF2	P35240	595 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	TTC38	Q5R3I4	469 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	C8orf74	Q6P047	294 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	METTL16	Q86W50	562 aa	Known RBP	12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	EFCC1	Q9HA90	598 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	AXIN2	Q9Y2T1	843 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	ADGRG1	Q9Y653	693 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	DIP2B	Q9P265	1576 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	EXOSC10	Q01780	885 aa	Known RBP	12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	PDE4B	Q07343	736 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	USPL1	Q5W0Q7	1092 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	SYMPK	Q92797	1274 aa	Known RBP	12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	KCNB2	Q92953	911 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	CAPS2	Q9BXY5	557 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	MKNK2	Q9HBH9	465 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	DLG5	Q8TDM6	1919 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	OVOS2	A0A0J9YW53	1432 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	OVOS2	Q6IE36	1432 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	MORC3	Q14149	939 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	DCAF5	Q96JK2	942 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	NOC4L	Q9BVI4	516 aa	Known RBP	12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	CDC42BPG	Q6DT37	1551 aa		12.8	□□□□□ -0.36
CLN3-238	ENST00000569430	ZNF609	O15014	1411 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	MED23	Q9ULK4	1368 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	SASH3	O75995	380 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	ITGA6	P23229	1130 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	MAP2K2	P36507	400 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	FMR1	Q06787	632 aa	Known RBP eCLIP	12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	BICDL1	Q6ZP65	573 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	CCDC121	Q6ZUS5	278 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	RIN2	Q8WYP3	895 aa	Predicted RBP	12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	SECISBP2L	Q93073	1101 aa	Known RBP	12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	STX8	Q9UNK0	236 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	TBX22	Q9Y458	520 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	MAGEA9	P43362	315 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	GUCY2F	P51841	1108 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	HDAC6	Q9UBN7	1215 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	CYP27A1	Q02318	531 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	TYW1B	Q6NUM6	668 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	FAM114A1	Q8IWE2	563 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	FUT8	Q9BYC5	575 aa		12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	FAM207A	Q9NSI2	230 aa	Predicted RBP	12.79	□□□□□ -0.36
CLN3-238	ENST00000569430	FAM170A	A1A519	330 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	CXCR5	P32302	372 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	GBP2	P32456	591 aa	Predicted RBP	12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	COPB1	P53618	953 aa	Known RBP	12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	RESP18	Q5W5W9	173 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	TRIML1	Q8N9V2	468 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	DYDC1	Q8WWB3	177 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	CCDC51	Q96ER9	411 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	ERCC5	P28715	1186 aa	Predicted RBP	12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	PPFIA1	Q13136	1202 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	TRIM14	Q14142	442 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	DTHD1	Q6ZMT9	781 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	HEATR3	Q7Z4Q2	680 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	ZNF654	Q8IZM8	581 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	TC2N	Q8N9U0	490 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	KAZALD1	Q96I82	304 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	PYM1	Q9BRP8	204 aa	Known RBP	12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	HAUS4	Q9H6D7	363 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	KNDC1	Q76NI1	1749 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	TLDC2	A0PJX2	215 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	SMIM23	A6NLE4	172 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	TFRC	P02786	760 aa	Known RBP	12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	AKNAD1	Q5T1N1	836 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	B4GALNT4	Q76KP1	1039 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	MYCBP	Q99417	103 aa	Predicted RBP	12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	POLD4	Q9HCU8	107 aa		12.78	□□□□□ -0.36
CLN3-238	ENST00000569430	PPAN	Q9NQ55	473 aa	Known RBP	12.78	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms