RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 EVI5LQ96CN4 794 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 TSC22D3Q99576 134 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 RHOXF2Q9BQY4 288 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 BATF3Q9NR55 127 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 NDUFB9Q9Y6M9 179 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 PSDA5PKW4 1024 aaPredicted RBP12.2□□□□□ -0.46
CLK3-226ENST00000569406 ATP5J2-PTCD1G3V325 749 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 PTCD1O75127 700 aaKnown RBP12.2□□□□□ -0.46
CLK3-226ENST00000569406 UPP2O95045 317 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 DDX58O95786 925 aaKnown RBP12.2□□□□□ -0.46
CLK3-226ENST00000569406 ZNF24P17028 368 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 MECOMQ03112 1051 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 NMIQ13287 307 aaPredicted RBP12.2□□□□□ -0.46
CLK3-226ENST00000569406 ZNF280DQ6N043 979 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 ATG9AQ7Z3C6 839 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 SAPCD2Q86UD0 394 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 PARP9Q8IXQ6 854 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 RIN2Q8WYP3 895 aaPredicted RBP12.2□□□□□ -0.46
CLK3-226ENST00000569406 SLC40A1Q9NP59 571 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 NUB1Q9Y5A7 615 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 ZNF335Q9H4Z2 1342 aaPredicted RBP12.2□□□□□ -0.46
CLK3-226ENST00000569406 ZSCAN12O43309 604 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 FSBPO95073 299 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 GJA8P48165 433 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 IRAK1P51617 712 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 ACCSLQ4AC99 568 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 SFMBT2Q5VUG0 894 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 MFN1Q8IWA4 741 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 IGSF22Q8N9C0 903 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 OSBPL9Q96SU4 736 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 GOLGA6L10A6NI86 522 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 H7C1W4 665 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 AHCYL1O43865 530 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 LGR5O75473 907 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 TUBB4AP04350 444 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 CDC37L1Q7L3B6 337 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 DNAAF2Q9NVR5 837 aaKnown RBP12.19□□□□□ -0.46
CLK3-226ENST00000569406 ZNF609O15014 1411 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 NEXNQ0ZGT2 675 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 MYO1EQ12965 1108 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 MIS18BP1Q6P0N0 1132 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 UBE3BQ7Z3V4 1068 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 RBM41Q96IZ5 413 aaKnown RBP12.19□□□□□ -0.46
CLK3-226ENST00000569406 SPAG5Q96R06 1193 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 UNC45AQ9H3U1 944 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 L1RE1Q9UN81 338 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 RIPOR2Q9Y4F9 1068 aa12.19□□□□□ -0.46
CLK3-226ENST00000569406 KDM4FA0A1W2PPD8 638 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 WDHD1O75717 1129 aaPredicted RBP12.18□□□□□ -0.46
CLK3-226ENST00000569406 ARHGAP25P42331 645 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 SMTNP53814 917 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 HOOK3Q86VS8 718 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 MAB21L3Q8N8X9 362 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 PLBD2Q8NHP8 589 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 NSMCE1Q8WV22 266 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 SLX1AQ9BQ83 275 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 HDAC6Q9UBN7 1215 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 DDX60Q8IY21 1712 aaKnown RBP12.18□□□□□ -0.46
CLK3-226ENST00000569406 NWD2Q9ULI1 1742 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 SMAPO00193 183 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 MEFVO15553 781 aaPredicted RBP12.18□□□□□ -0.46
CLK3-226ENST00000569406 STX6O43752 255 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 BUB1BO60566 1050 aaPredicted RBP12.18□□□□□ -0.46
CLK3-226ENST00000569406 SYT1P21579 422 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 TFCP2Q12800 502 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 BZW1Q7L1Q6 419 aaKnown RBP12.18□□□□□ -0.46
CLK3-226ENST00000569406 RSRC2Q7L4I2 434 aaKnown RBP12.18□□□□□ -0.46
CLK3-226ENST00000569406 FESP07332 822 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 GNGT1P63211 74 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 TNNI3KQ59H18 835 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 PRPF40BQ6NWY9 871 aaKnown RBP12.18□□□□□ -0.46
CLK3-226ENST00000569406 SDCCAG8Q86SQ7 713 aaPredicted RBP12.18□□□□□ -0.46
CLK3-226ENST00000569406 FAM76AQ8TAV0 307 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 ALS2CR12Q96Q35 445 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 BOLA2Q9H3K6 86 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 TRPC6Q9Y210 931 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 FPGT-TNNI3KV9GXZ4 949 aa12.18□□□□□ -0.46
CLK3-226ENST00000569406 COL16A1Q07092 1604 aaPredicted RBP12.17□□□□□ -0.46
CLK3-226ENST00000569406 RNF8O76064 485 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 A1BGP04217 495 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 IFIT2P09913 472 aaKnown RBP12.17□□□□□ -0.46
CLK3-226ENST00000569406 CYP11B2P19099 503 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 STK3Q13188 491 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 USPL1Q5W0Q7 1092 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 B4GALNT4Q76KP1 1039 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 CCDC83Q8IWF9 413 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 TM6SF1Q9BZW5 370 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 SLAIN2Q9P270 581 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 FANCGO15287 622 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 F13A1P00488 732 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 SLC8A1P32418 973 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 CHMP4BP1P59074 171 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 SPATA7Q9P0W8 599 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 HOOK1Q9UJC3 728 aaKnown RBP12.17□□□□□ -0.46
CLK3-226ENST00000569406 SLIT2O94813 1529 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 WNK3Q9BYP7 1800 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 PCDH11XQ9BZA7 1347 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 PCDH11YQ9BZA8 1340 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 ZNF202O95125 648 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 CABP4P57796 275 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms