RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 CDV3Q9UKY7 258 aaKnown RBP3.82□□□□□ -1.8
VPS35-209ENST00000568642 DOLKQ9UPQ8 538 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 LZTS1Q9Y250 596 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 EFR3BQ9Y2G0 817 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 MRPS23Q9Y3D9 190 aaKnown RBP3.82□□□□□ -1.8
VPS35-209ENST00000568642 PPP2R3BQ9Y5P8 575 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 PIEZO1Q92508 2521 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 TNRC6CQ9HCJ0 1690 aaKnown RBP3.81□□□□□ -1.8
VPS35-209ENST00000568642 THSD7AQ9UPZ6 1657 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 MST1RQ04912 1400 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 PRSS47A8MTI9 375 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 PIP5K1CO60331 668 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 GREM1O60565 184 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 THBS1P07996 1170 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 PMLP29590 882 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 MAN1A1P33908 653 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 COPB2P35606 906 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 ATP2B2Q01814 1243 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 GALEQ14376 348 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 PPP2R5AQ15172 486 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 LONRF1Q17RB8 773 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.81□□□□□ -1.8
VPS35-209ENST00000568642 C2orf27AQ580R0 203 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 LCE4AQ5TA78 99 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 USPL1Q5W0Q7 1092 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 C16orf54Q6UWD8 224 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 FAM196AQ6ZSG2 479 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 ETFBKMTQ8IXQ9 262 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 E2F7Q96AV8 911 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 RUNDC1Q96C34 613 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 TRMT2BQ96GJ1 504 aaKnown RBP3.81□□□□□ -1.8
VPS35-209ENST00000568642 GAS2L1Q99501 681 aaPredicted RBP3.81□□□□□ -1.8
VPS35-209ENST00000568642 RSRP1Q9BUV0 290 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 CARD14Q9BXL6 1004 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 TRIM8Q9BZR9 551 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 GGNBP2Q9H3C7 697 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 NOP53Q9NZM5 478 aaKnown RBP3.81□□□□□ -1.8
VPS35-209ENST00000568642 GDF2Q9UK05 429 aaPredicted RBP3.81□□□□□ -1.8
VPS35-209ENST00000568642 CEP290O15078 2479 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 COL24A1Q17RW2 1714 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 PREX2Q70Z35 1606 aa3.81□□□□□ -1.8
VPS35-209ENST00000568642 DCCP43146 1447 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 SBF2Q86WG5 1849 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 CCDC163A0A0D9SF12 145 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 GSG1L2A8MUP6 293 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 H7C1W4 665 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 SMAD7O15105 426 aaKnown RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 TIMM44O43615 452 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 TNFRSF21O75509 655 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 F2P00734 622 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 FOSP01100 380 aaPredicted RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 PDGFAP04085 211 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 MYL1P05976 194 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 HSPA8P11142 646 aaKnown RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 EIF4BP23588 611 aaKnown RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 SOX10P56693 466 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 RAPGEF1Q13905 1077 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 SAFB2Q14151 953 aaKnown RBP eCLIP3.8□□□□□ -1.8
VPS35-209ENST00000568642 HLTFQ14527 1009 aaKnown RBP eCLIP3.8□□□□□ -1.8
VPS35-209ENST00000568642 KCTD2Q14681 263 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 C21orf62-AS1Q17RA5 79 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 RNF20Q5VTR2 975 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 NXNQ6DKJ4 435 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 PDXDC1Q6P996 788 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 LVRNQ6Q4G3 990 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 LHFPL2Q6ZUX7 228 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 STRA8Q7Z7C7 330 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 TCEAL8Q8IYN2 117 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 CHPFQ8IZ52 775 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 MYO1HQ8N1T3 1032 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 NBPF15Q8N660 670 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 TMC1Q8TDI8 760 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 SCG3Q8WXD2 468 aaKnown RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 PPM1EQ8WY54 764 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 NUDT16Q96DE0 195 aaKnown RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 MYO19Q96H55 970 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 SERINC2Q96SA4 455 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 CEP89Q96ST8 783 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 TRIM56Q9BRZ2 755 aaKnown RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 SPON2Q9BUD6 331 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 TSPAN10Q9H1Z9 355 aaPredicted RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 SLKQ9H2G2 1235 aaPredicted RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 NGRNQ9NPE2 291 aaKnown RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 TMPRSS4Q9NRS4 437 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 ANAPC4Q9UJX5 808 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 TPX2Q9ULW0 747 aaKnown RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 SLC45A1Q9Y2W3 748 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 PTCH2Q9Y6C5 1203 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 NRAPQ86VF7 1730 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 INO80Q9ULG1 1556 aaPredicted RBP3.8□□□□□ -1.8
VPS35-209ENST00000568642 ADGRB3O60242 1522 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 SYCP2Q9BX26 1530 aa3.8□□□□□ -1.8
VPS35-209ENST00000568642 RPRD2Q5VT52 1461 aaKnown RBP3.79□□□□□ -1.8
VPS35-209ENST00000568642 UNC80Q8N2C7 3258 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 PIK3R2O00459 728 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 PDPK1O15530 556 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 KATNA1O75449 491 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 SSBP05455 408 aaKnown RBP eCLIP3.79□□□□□ -1.8
VPS35-209ENST00000568642 KRT18P05783 430 aaKnown RBP3.79□□□□□ -1.8
VPS35-209ENST00000568642 ADH1AP07327 375 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms