RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 TNFRSF10AO00220 468 aa16.79■□□□□ 0.28
CLN3-235ENST00000568497 PDE4AP27815 886 aa16.79■□□□□ 0.28
CLN3-235ENST00000568497 CCDC84Q86UT8 332 aaPredicted RBP16.79■□□□□ 0.28
CLN3-235ENST00000568497 SEMA6BQ9H3T3 888 aa16.79■□□□□ 0.28
CLN3-235ENST00000568497 ARMT1Q9H993 441 aa16.79■□□□□ 0.28
CLN3-235ENST00000568497 LAMA2P24043 3122 aaKnown RBP16.79■□□□□ 0.28
CLN3-235ENST00000568497 DOCK1Q14185 1865 aa16.79■□□□□ 0.28
CLN3-235ENST00000568497 CDK5RAP2Q96SN8 1893 aa16.78■□□□□ 0.28
CLN3-235ENST00000568497 TMEM265A0A087WTH1 108 aa16.78■□□□□ 0.28
CLN3-235ENST00000568497 PRKAB2O43741 272 aa16.78■□□□□ 0.28
CLN3-235ENST00000568497 LDHCP07864 332 aa16.78■□□□□ 0.28
CLN3-235ENST00000568497 COL6A1P12109 1028 aa16.78■□□□□ 0.28
CLN3-235ENST00000568497 MX1P20591 662 aa16.78■□□□□ 0.28
CLN3-235ENST00000568497 GCLCP48506 637 aaPredicted RBP16.78■□□□□ 0.28
CLN3-235ENST00000568497 MAP3K10Q02779 954 aa16.78■□□□□ 0.28
CLN3-235ENST00000568497 MAP3K12Q12852 859 aa16.78■□□□□ 0.28
CLN3-235ENST00000568497 SHROOM1Q2M3G4 852 aaPredicted RBP16.78■□□□□ 0.28
CLN3-235ENST00000568497 LCORLQ8N3X6 602 aa16.78■□□□□ 0.28
CLN3-235ENST00000568497 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLN3-235ENST00000568497 FAM122AQ96E09 287 aa16.78■□□□□ 0.28
CLN3-235ENST00000568497 PLA2G5P39877 138 aa16.77■□□□□ 0.28
CLN3-235ENST00000568497 NUCB1Q02818 461 aa16.77■□□□□ 0.28
CLN3-235ENST00000568497 TJAP1Q5JTD0 557 aa16.77■□□□□ 0.28
CLN3-235ENST00000568497 MAP3K21Q5TCX8 1036 aa16.77■□□□□ 0.28
CLN3-235ENST00000568497 CHD1LQ86WJ1 897 aa16.77■□□□□ 0.28
CLN3-235ENST00000568497 SLF2Q8IX21 1173 aa16.77■□□□□ 0.28
CLN3-235ENST00000568497 ZBTB47Q9UFB7 747 aaPredicted RBP16.77■□□□□ 0.28
CLN3-235ENST00000568497 PHIPQ8WWQ0 1821 aa16.76■□□□□ 0.27
CLN3-235ENST00000568497 CTNND1O60716 968 aaKnown RBP16.76■□□□□ 0.27
CLN3-235ENST00000568497 MBD4O95243 580 aa16.76■□□□□ 0.27
CLN3-235ENST00000568497 CYP2D6P10635 497 aa16.76■□□□□ 0.27
CLN3-235ENST00000568497 ADD2P35612 726 aa16.76■□□□□ 0.27
CLN3-235ENST00000568497 PDE1AP54750 535 aa16.76■□□□□ 0.27
CLN3-235ENST00000568497 RRP1BQ14684 758 aaKnown RBP16.76■□□□□ 0.27
CLN3-235ENST00000568497 SDR42E1Q8WUS8 393 aa16.76■□□□□ 0.27
CLN3-235ENST00000568497 SEC62Q99442 399 aaKnown RBP16.76■□□□□ 0.27
CLN3-235ENST00000568497 NOL10Q9BSC4 688 aaKnown RBP16.76■□□□□ 0.27
CLN3-235ENST00000568497 IDI2Q9BXS1 227 aa16.76■□□□□ 0.27
CLN3-235ENST00000568497 PALD1Q9ULE6 856 aa16.76■□□□□ 0.27
CLN3-235ENST00000568497 MAGEB6P1A0A0J9YX57 407 aa16.75■□□□□ 0.27
CLN3-235ENST00000568497 ENTPD3O75355 529 aa16.75■□□□□ 0.27
CLN3-235ENST00000568497 ZKSCAN1P17029 563 aaPredicted RBP16.75■□□□□ 0.27
CLN3-235ENST00000568497 PABPC4Q13310 644 aaKnown RBP eCLIP16.75■□□□□ 0.27
CLN3-235ENST00000568497 GPATCH3Q96I76 525 aa16.75■□□□□ 0.27
CLN3-235ENST00000568497 RIOK1Q9BRS2 568 aaKnown RBP16.75■□□□□ 0.27
CLN3-235ENST00000568497 SENP6Q9GZR1 1112 aaPredicted RBP16.75■□□□□ 0.27
CLN3-235ENST00000568497 PUS7LQ9H0K6 701 aaKnown RBP16.75■□□□□ 0.27
CLN3-235ENST00000568497 OSBPL5Q9H0X9 879 aaPredicted RBP16.75■□□□□ 0.27
CLN3-235ENST00000568497 FLT1P17948 1338 aa16.74■□□□□ 0.27
CLN3-235ENST00000568497 CYP2D7A0A087X1C5 515 aa16.74■□□□□ 0.27
CLN3-235ENST00000568497 M0R2C6 588 aa16.74■□□□□ 0.27
CLN3-235ENST00000568497 CCND3P30281 292 aaPredicted RBP16.74■□□□□ 0.27
CLN3-235ENST00000568497 ATN1P54259 1190 aaPredicted RBP16.74■□□□□ 0.27
CLN3-235ENST00000568497 PPP4CP60510 307 aa16.74■□□□□ 0.27
CLN3-235ENST00000568497 TTF1Q15361 905 aaPredicted RBP16.74■□□□□ 0.27
CLN3-235ENST00000568497 PLEKHM2Q8IWE5 1019 aa16.74■□□□□ 0.27
CLN3-235ENST00000568497 PROCA1Q8NCQ7 364 aaPredicted RBP16.74■□□□□ 0.27
CLN3-235ENST00000568497 NUDT12Q9BQG2 462 aa16.74■□□□□ 0.27
CLN3-235ENST00000568497 TTYH1Q9H313 450 aaPredicted RBP16.74■□□□□ 0.27
CLN3-235ENST00000568497 PLXNB2O15031 1838 aa16.74■□□□□ 0.27
CLN3-235ENST00000568497 MYH7P12883 1935 aa16.74■□□□□ 0.27
CLN3-235ENST00000568497 SIPA1L1O43166 1804 aa16.73■□□□□ 0.27
CLN3-235ENST00000568497 BAG3O95817 575 aa16.73■□□□□ 0.27
CLN3-235ENST00000568497 USP5P45974 858 aa16.73■□□□□ 0.27
CLN3-235ENST00000568497 CACNB2Q08289 660 aaPredicted RBP16.73■□□□□ 0.27
CLN3-235ENST00000568497 AAMPQ13685 434 aa16.73■□□□□ 0.27
CLN3-235ENST00000568497 SHHQ15465 462 aa16.73■□□□□ 0.27
CLN3-235ENST00000568497 CCDC129Q6ZRS4 1044 aa16.73■□□□□ 0.27
CLN3-235ENST00000568497 STK11IPQ8N1F8 1099 aa16.73■□□□□ 0.27
CLN3-235ENST00000568497 SOCS4Q8WXH5 440 aa16.73■□□□□ 0.27
CLN3-235ENST00000568497 OSBP2Q969R2 916 aa16.73■□□□□ 0.27
CLN3-235ENST00000568497 CDH23Q9H251 3354 aa16.72■□□□□ 0.27
CLN3-235ENST00000568497 GLRX3O76003 335 aaKnown RBP16.72■□□□□ 0.27
CLN3-235ENST00000568497 XRCC5P13010 732 aaKnown RBP16.72■□□□□ 0.27
CLN3-235ENST00000568497 HMGCS2P54868 508 aa16.72■□□□□ 0.27
CLN3-235ENST00000568497 JAG1P78504 1218 aa16.72■□□□□ 0.27
CLN3-235ENST00000568497 SPP2Q13103 211 aa16.72■□□□□ 0.27
CLN3-235ENST00000568497 C9orf50Q5SZB4 431 aa16.72■□□□□ 0.27
CLN3-235ENST00000568497 CCAR1Q8IX12 1150 aaKnown RBP16.72■□□□□ 0.27
CLN3-235ENST00000568497 KBTBD3Q8NAB2 608 aa16.72■□□□□ 0.27
CLN3-235ENST00000568497 FSD1Q9BTV5 496 aa16.72■□□□□ 0.27
CLN3-235ENST00000568497 ASCC2Q9H1I8 757 aaPredicted RBP16.72■□□□□ 0.27
CLN3-235ENST00000568497 MUC3AQ02505 3323 aa16.72■□□□□ 0.27
CLN3-235ENST00000568497 LOC285556D6RIA3 1793 aa16.72■□□□□ 0.27
CLN3-235ENST00000568497 TTC41PQ6P2S7 1318 aa16.71■□□□□ 0.27
CLN3-235ENST00000568497 LTBP2Q14767 1821 aa16.71■□□□□ 0.27
CLN3-235ENST00000568497 LHX8Q68G74 356 aa16.71■□□□□ 0.27
CLN3-235ENST00000568497 TRMT44Q8IYL2 757 aaKnown RBP16.71■□□□□ 0.27
CLN3-235ENST00000568497 PRDM5Q9NQX1 630 aaPredicted RBP16.71■□□□□ 0.27
CLN3-235ENST00000568497 MORF4L1Q9UBU8 362 aa16.71■□□□□ 0.27
CLN3-235ENST00000568497 FRMPD3Q5JV73 1810 aa16.7■□□□□ 0.26
CLN3-235ENST00000568497 BAZ2AQ9UIF9 1905 aaKnown RBP16.7■□□□□ 0.26
CLN3-235ENST00000568497 RTP1P59025 263 aa16.7■□□□□ 0.26
CLN3-235ENST00000568497 IRX3P78415 501 aaPredicted RBP16.7■□□□□ 0.26
CLN3-235ENST00000568497 SMAD3P84022 425 aaKnown RBP16.7■□□□□ 0.26
CLN3-235ENST00000568497 RILPL2Q969X0 211 aa16.7■□□□□ 0.26
CLN3-235ENST00000568497 TBC1D2Q9BYX2 928 aa16.7■□□□□ 0.26
CLN3-235ENST00000568497 DNAJC18Q9H819 358 aa16.7■□□□□ 0.26
CLN3-235ENST00000568497 CWC22Q9HCG8 908 aaKnown RBP16.7■□□□□ 0.26
CLN3-235ENST00000568497 ATP11BQ9Y2G3 1177 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms