RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 C16orf86Q6ZW13 317 aa18.02■□□□□ 0.48
VPS39-210ENST00000568357 AMOTL1Q8IY63 956 aa18.02■□□□□ 0.48
VPS39-210ENST00000568357 ZNF333Q96JL9 665 aa18.02■□□□□ 0.48
VPS39-210ENST00000568357 EPB41L4AQ9HCS5 686 aaPredicted RBP18.02■□□□□ 0.48
VPS39-210ENST00000568357 TAOK2Q9UL54 1235 aa18.02■□□□□ 0.48
VPS39-210ENST00000568357 MPHOSPH10O00566 681 aaKnown RBP18.01■□□□□ 0.47
VPS39-210ENST00000568357 APPP05067 770 aa18.01■□□□□ 0.47
VPS39-210ENST00000568357 AKR1B1P15121 316 aa18.01■□□□□ 0.47
VPS39-210ENST00000568357 GNAT2P19087 354 aa18.01■□□□□ 0.47
VPS39-210ENST00000568357 PSMC4P43686 418 aa18.01■□□□□ 0.47
VPS39-210ENST00000568357 ARHGEF6Q15052 776 aa18.01■□□□□ 0.47
VPS39-210ENST00000568357 USP17L2Q6R6M4 530 aa18.01■□□□□ 0.47
VPS39-210ENST00000568357 CHRDL2Q6WN34 429 aa18.01■□□□□ 0.47
VPS39-210ENST00000568357 SMCR8Q8TEV9 937 aaPredicted RBP18.01■□□□□ 0.47
VPS39-210ENST00000568357 TRIM47Q96LD4 638 aa18.01■□□□□ 0.47
VPS39-210ENST00000568357 ASCC2Q9H1I8 757 aaPredicted RBP18.01■□□□□ 0.47
VPS39-210ENST00000568357 OSBPL3Q9H4L5 887 aa18.01■□□□□ 0.47
VPS39-210ENST00000568357 ARPP21Q9UBL0 812 aaPredicted RBP18.01■□□□□ 0.47
VPS39-210ENST00000568357 CEP290O15078 2479 aa18■□□□□ 0.47
VPS39-210ENST00000568357 MINDY4BA8MYZ0 360 aa18■□□□□ 0.47
VPS39-210ENST00000568357 OSBPP22059 807 aa18■□□□□ 0.47
VPS39-210ENST00000568357 HOXA7P31268 230 aaPredicted RBP18■□□□□ 0.47
VPS39-210ENST00000568357 PABPC4Q13310 644 aaKnown RBP eCLIP18■□□□□ 0.47
VPS39-210ENST00000568357 ZYXQ15942 572 aaKnown RBP18■□□□□ 0.47
VPS39-210ENST00000568357 CCDC129Q6ZRS4 1044 aa18■□□□□ 0.47
VPS39-210ENST00000568357 SIAH1Q8IUQ4 282 aa18■□□□□ 0.47
VPS39-210ENST00000568357 IFNL3Q8IZI9 196 aa18■□□□□ 0.47
VPS39-210ENST00000568357 P2RX7Q99572 595 aaKnown RBP18■□□□□ 0.47
VPS39-210ENST00000568357 TMEM106CQ9BVX2 250 aa18■□□□□ 0.47
VPS39-210ENST00000568357 PNMA3Q9UL41 463 aa18■□□□□ 0.47
VPS39-210ENST00000568357 NAV1Q8NEY1 1877 aa18■□□□□ 0.47
VPS39-210ENST00000568357 ATAD5Q96QE3 1844 aa18■□□□□ 0.47
VPS39-210ENST00000568357 A0A1W2PRG0 241 aa17.99■□□□□ 0.47
VPS39-210ENST00000568357 TRIM6-TRIM34B2RNG4 842 aa17.99■□□□□ 0.47
VPS39-210ENST00000568357 TMEM179Q6ZVK1 233 aa17.99■□□□□ 0.47
VPS39-210ENST00000568357 STK11IPQ8N1F8 1099 aa17.99■□□□□ 0.47
VPS39-210ENST00000568357 ANKRD13CQ8N6S4 541 aa17.99■□□□□ 0.47
VPS39-210ENST00000568357 CCDC17Q96LX7 622 aa17.99■□□□□ 0.47
VPS39-210ENST00000568357 KIAA1683Q9H0B3 1180 aa17.99■□□□□ 0.47
VPS39-210ENST00000568357 PTPRFP10586 1907 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 MYH7P12883 1935 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 FOXP2O15409 715 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 FMNL1O95466 1100 aaPredicted RBP17.98■□□□□ 0.47
VPS39-210ENST00000568357 GNRH1P01148 92 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 PDE4AP27815 886 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 TDO2P48775 406 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 CLEC10AQ8IUN9 316 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 SLC17A8Q8NDX2 589 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 RILPL2Q969X0 211 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 C12orf42Q96LP6 360 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 FAM227BQ96M60 508 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 FEZ1Q99689 392 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 PTCH2Q9Y6C5 1203 aa17.98■□□□□ 0.47
VPS39-210ENST00000568357 PEX10O60683 326 aa17.97■□□□□ 0.47
VPS39-210ENST00000568357 MYCP01106 439 aaPredicted RBP17.97■□□□□ 0.47
VPS39-210ENST00000568357 GCLCP48506 637 aaPredicted RBP17.97■□□□□ 0.47
VPS39-210ENST00000568357 USP14P54578 494 aa17.97■□□□□ 0.47
VPS39-210ENST00000568357 POTEEQ6S8J3 1075 aa17.97■□□□□ 0.47
VPS39-210ENST00000568357 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.97■□□□□ 0.47
VPS39-210ENST00000568357 HELLSQ9NRZ9 838 aa17.97■□□□□ 0.47
VPS39-210ENST00000568357 RBM27Q9P2N5 1060 aaKnown RBP17.97■□□□□ 0.47
VPS39-210ENST00000568357 A0A0D9SFI3 127 aa17.96■□□□□ 0.47
VPS39-210ENST00000568357 RASA1P20936 1047 aa17.96■□□□□ 0.47
VPS39-210ENST00000568357 IRX3P78415 501 aaPredicted RBP17.96■□□□□ 0.47
VPS39-210ENST00000568357 VPS53Q5VIR6 699 aa17.96■□□□□ 0.47
VPS39-210ENST00000568357 TICAM2Q86XR7 235 aa17.96■□□□□ 0.47
VPS39-210ENST00000568357 NACAP1Q9BZK3 213 aa17.96■□□□□ 0.47
VPS39-210ENST00000568357 SRRDQ9UH36 339 aa17.96■□□□□ 0.47
VPS39-210ENST00000568357 LOC285556D6RIA3 1793 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 VCAM1P19320 739 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 FCGRTP55899 365 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 HERVK_113P62684 666 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 NMIQ13287 307 aaPredicted RBP17.95■□□□□ 0.46
VPS39-210ENST00000568357 FAM110CQ1W6H9 321 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 SLC9C1Q4G0N8 1177 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 MCMDC2Q4G0Z9 681 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 KIAA1755Q5JYT7 1200 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 CATSPERGQ6ZRH7 1159 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 MKNK2Q9HBH9 465 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 TXNRD2Q9NNW7 524 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 RBPJLQ9UBG7 517 aa17.95■□□□□ 0.46
VPS39-210ENST00000568357 BAZ2AQ9UIF9 1905 aaKnown RBP17.95■□□□□ 0.46
VPS39-210ENST00000568357 ROBO3Q96MS0 1386 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 USP17L15C9J2P7 530 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 USP17L13C9JLJ4 530 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 USP17L11C9JVI0 530 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 USP17L18D6R9N7 530 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 USP17L22D6RA61 530 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 USP17L17D6RBQ6 530 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 USP17L19D6RCP7 530 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 USP17L20D6RJB6 530 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 PRDM1O75626 825 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 SDSP20132 328 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 HOXD10P28358 340 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 ICA1Q05084 483 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 USP17L24Q0WX57 530 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 NAPBQ9H115 298 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 KANSL2Q9H9L4 492 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 MORF4L1Q9UBU8 362 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 GABRQQ9UN88 632 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms