RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-223ENST00000568301 TTC6Q86TZ1 520 aa18.32■□□□□ 0.52
COMMD4-223ENST00000568301 MIGA1Q8NAN2 632 aa18.32■□□□□ 0.52
COMMD4-223ENST00000568301 USP6NLQ92738 828 aa18.32■□□□□ 0.52
COMMD4-223ENST00000568301 C12orf42Q96LP6 360 aa18.32■□□□□ 0.52
COMMD4-223ENST00000568301 UBE2OQ9C0C9 1292 aaKnown RBP18.32■□□□□ 0.52
COMMD4-223ENST00000568301 PORCNQ9H237 461 aa18.32■□□□□ 0.52
COMMD4-223ENST00000568301 COL6A1P12109 1028 aa18.31■□□□□ 0.52
COMMD4-223ENST00000568301 ZKSCAN1P17029 563 aaPredicted RBP18.31■□□□□ 0.52
COMMD4-223ENST00000568301 CCND3P30281 292 aaPredicted RBP18.31■□□□□ 0.52
COMMD4-223ENST00000568301 ERVK-9P63128 1117 aa18.31■□□□□ 0.52
COMMD4-223ENST00000568301 ERVK-24P63145 666 aa18.31■□□□□ 0.52
COMMD4-223ENST00000568301 PDE3AQ14432 1141 aa18.31■□□□□ 0.52
COMMD4-223ENST00000568301 LHX8Q68G74 356 aa18.31■□□□□ 0.52
COMMD4-223ENST00000568301 CCAR1Q8IX12 1150 aaKnown RBP18.31■□□□□ 0.52
COMMD4-223ENST00000568301 ANTXR1Q9H6X2 564 aa18.31■□□□□ 0.52
COMMD4-223ENST00000568301 MTMR10Q9NXD2 777 aa18.31■□□□□ 0.52
COMMD4-223ENST00000568301 VCANP13611 3396 aa18.31■□□□□ 0.52
COMMD4-223ENST00000568301 LRRC26Q2I0M4 334 aa18.3■□□□□ 0.52
COMMD4-223ENST00000568301 HSP90AB4PQ58FF6 505 aa18.3■□□□□ 0.52
COMMD4-223ENST00000568301 MORN1Q5T089 497 aa18.3■□□□□ 0.52
COMMD4-223ENST00000568301 GPR142Q7Z601 462 aa18.3■□□□□ 0.52
COMMD4-223ENST00000568301 AACSQ86V21 672 aa18.3■□□□□ 0.52
COMMD4-223ENST00000568301 PAGR1Q9BTK6 254 aa18.3■□□□□ 0.52
COMMD4-223ENST00000568301 KIAA1683Q9H0B3 1180 aa18.3■□□□□ 0.52
COMMD4-223ENST00000568301 STXBP5LQ9Y2K9 1186 aa18.3■□□□□ 0.52
COMMD4-223ENST00000568301 USP17L15C9J2P7 530 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 USP17L13C9JLJ4 530 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 USP17L11C9JVI0 530 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 USP17L18D6R9N7 530 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 USP17L22D6RA61 530 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 USP17L17D6RBQ6 530 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 USP17L19D6RCP7 530 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 USP17L20D6RJB6 530 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 RGS2P41220 211 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 USP14P54578 494 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 USP17L24Q0WX57 530 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 CERKLQ49MI3 558 aaPredicted RBP18.29■□□□□ 0.52
COMMD4-223ENST00000568301 FEZ1Q99689 392 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 EXOC6BQ9Y2D4 811 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 RABGAP1Q9Y3P9 1069 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 NDUFB9Q9Y6M9 179 aa18.29■□□□□ 0.52
COMMD4-223ENST00000568301 MDM2Q00987 491 aaPredicted RBP18.28■□□□□ 0.52
COMMD4-223ENST00000568301 TTF1Q15361 905 aaPredicted RBP18.28■□□□□ 0.52
COMMD4-223ENST00000568301 ABCB5Q2M3G0 1257 aa18.28■□□□□ 0.52
COMMD4-223ENST00000568301 PLEKHH3Q7Z736 793 aa18.28■□□□□ 0.52
COMMD4-223ENST00000568301 RIOK1Q9BRS2 568 aaKnown RBP18.28■□□□□ 0.52
COMMD4-223ENST00000568301 CABP5Q9NP86 173 aa18.28■□□□□ 0.52
COMMD4-223ENST00000568301 GLRX3O76003 335 aaKnown RBP18.27■□□□□ 0.52
COMMD4-223ENST00000568301 CCNA1P78396 465 aa18.27■□□□□ 0.52
COMMD4-223ENST00000568301 RAB3GAP1Q15042 981 aa18.27■□□□□ 0.52
COMMD4-223ENST00000568301 LBX2Q6XYB7 198 aa18.27■□□□□ 0.52
COMMD4-223ENST00000568301 CATSPERGQ6ZRH7 1159 aa18.27■□□□□ 0.52
COMMD4-223ENST00000568301 APBA2Q99767 749 aa18.27■□□□□ 0.52
COMMD4-223ENST00000568301 PRUNE2Q8WUY3 3088 aa18.26■□□□□ 0.51
COMMD4-223ENST00000568301 MAGEB6P1A0A0J9YX57 407 aa18.26■□□□□ 0.51
COMMD4-223ENST00000568301 CNMDO75829 334 aa18.26■□□□□ 0.51
COMMD4-223ENST00000568301 MS4A1P11836 297 aa18.26■□□□□ 0.51
COMMD4-223ENST00000568301 SHMT1P34896 483 aa18.26■□□□□ 0.51
COMMD4-223ENST00000568301 PLCD1P51178 756 aa18.26■□□□□ 0.51
COMMD4-223ENST00000568301 RHPN1Q8TCX5 695 aa18.26■□□□□ 0.51
COMMD4-223ENST00000568301 PANK1Q8TE04 598 aa18.26■□□□□ 0.51
COMMD4-223ENST00000568301 POLR3DP05423 398 aaPredicted RBP18.25■□□□□ 0.51
COMMD4-223ENST00000568301 VCAM1P19320 739 aa18.25■□□□□ 0.51
COMMD4-223ENST00000568301 GABPAQ06546 454 aa18.25■□□□□ 0.51
COMMD4-223ENST00000568301 MAP2K5Q13163 448 aa18.25■□□□□ 0.51
COMMD4-223ENST00000568301 ZYXQ15942 572 aaKnown RBP18.25■□□□□ 0.51
COMMD4-223ENST00000568301 SLC9C2Q5TAH2 1124 aa18.25■□□□□ 0.51
COMMD4-223ENST00000568301 MIER1Q8N108 512 aa18.25■□□□□ 0.51
COMMD4-223ENST00000568301 CLASRPQ8N2M8 674 aaKnown RBP18.25■□□□□ 0.51
COMMD4-223ENST00000568301 ACER1Q8TDN7 264 aa18.25■□□□□ 0.51
COMMD4-223ENST00000568301 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.25■□□□□ 0.51
COMMD4-223ENST00000568301 EDC3Q96F86 508 aaKnown RBP18.25■□□□□ 0.51
COMMD4-223ENST00000568301 IL1RAPL2Q9NP60 686 aa18.25■□□□□ 0.51
COMMD4-223ENST00000568301 FLRT1Q9NZU1 646 aa18.25■□□□□ 0.51
COMMD4-223ENST00000568301 FRMPD3Q5JV73 1810 aa18.25■□□□□ 0.51
COMMD4-223ENST00000568301 RPAP2Q8IXW5 612 aaPredicted RBP18.24■□□□□ 0.51
COMMD4-223ENST00000568301 KIF1BPQ96EK5 621 aa18.24■□□□□ 0.51
COMMD4-223ENST00000568301 CRNKL1Q9BZJ0 848 aaKnown RBP18.24■□□□□ 0.51
COMMD4-223ENST00000568301 SENP6Q9GZR1 1112 aaPredicted RBP18.24■□□□□ 0.51
COMMD4-223ENST00000568301 CWC22Q9HCG8 908 aaKnown RBP18.24■□□□□ 0.51
COMMD4-223ENST00000568301 ZBED9Q6R2W3 1325 aa18.23■□□□□ 0.51
COMMD4-223ENST00000568301 SLC15A5A6NIM6 579 aa18.23■□□□□ 0.51
COMMD4-223ENST00000568301 PDE6AP16499 860 aa18.23■□□□□ 0.51
COMMD4-223ENST00000568301 GUCY1A2P33402 732 aa18.23■□□□□ 0.51
COMMD4-223ENST00000568301 MCM9Q9NXL9 1143 aa18.23■□□□□ 0.51
COMMD4-223ENST00000568301 CDH23Q9H251 3354 aa18.23■□□□□ 0.51
COMMD4-223ENST00000568301 POTEB2H3BUK9 544 aa18.22■□□□□ 0.51
COMMD4-223ENST00000568301 HMMRO75330 724 aa18.22■□□□□ 0.51
COMMD4-223ENST00000568301 HOXC6P09630 235 aa18.22■□□□□ 0.51
COMMD4-223ENST00000568301 PTPREP23469 700 aa18.22■□□□□ 0.51
COMMD4-223ENST00000568301 WDR78Q5VTH9 848 aa18.22■□□□□ 0.51
COMMD4-223ENST00000568301 RPAP3Q9H6T3 665 aaPredicted RBP18.22■□□□□ 0.51
COMMD4-223ENST00000568301 SPTBN5Q9NRC6 3674 aaKnown RBP18.22■□□□□ 0.51
COMMD4-223ENST00000568301 NAV1Q8NEY1 1877 aa18.22■□□□□ 0.51
COMMD4-223ENST00000568301 ZNF532Q9HCE3 1301 aa18.22■□□□□ 0.51
COMMD4-223ENST00000568301 TCRBV5S4A2TA0A5A2 114 aa18.21■□□□□ 0.51
COMMD4-223ENST00000568301 SPDYE16A6NNV3 312 aaPredicted RBP18.21■□□□□ 0.51
COMMD4-223ENST00000568301 IFIT2P09913 472 aaKnown RBP18.21■□□□□ 0.51
COMMD4-223ENST00000568301 SEPT2Q15019 361 aa18.21■□□□□ 0.51
COMMD4-223ENST00000568301 MFSD14CQ5VZR4 134 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms