RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 BADQ92934 168 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 P2RX7Q99572 595 aaKnown RBP13.77□□□□□ -0.21
CLN3-226ENST00000567160 IL1RAPL2Q9NP60 686 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 CEP126Q9P2H0 1117 aa13.77□□□□□ -0.21
CLN3-226ENST00000567160 KBTBD13C9JR72 458 aa13.76□□□□□ -0.21
CLN3-226ENST00000567160 NPM3O75607 178 aaKnown RBP13.76□□□□□ -0.21
CLN3-226ENST00000567160 BACE1P56817 501 aa13.76□□□□□ -0.21
CLN3-226ENST00000567160 MAP2K5Q13163 448 aa13.76□□□□□ -0.21
CLN3-226ENST00000567160 MTMR2Q13614 643 aa13.76□□□□□ -0.21
CLN3-226ENST00000567160 SPTY2D1Q68D10 685 aaPredicted RBP13.76□□□□□ -0.21
CLN3-226ENST00000567160 CENPQQ7L2Z9 268 aaPredicted RBP13.76□□□□□ -0.21
CLN3-226ENST00000567160 ARRDC4Q8NCT1 418 aa13.76□□□□□ -0.21
CLN3-226ENST00000567160 KIF1BPQ96EK5 621 aa13.76□□□□□ -0.21
CLN3-226ENST00000567160 EDC3Q96F86 508 aaKnown RBP13.76□□□□□ -0.21
CLN3-226ENST00000567160 FAM163AQ96GL9 167 aaPredicted RBP13.76□□□□□ -0.21
CLN3-226ENST00000567160 RNPC3Q96LT9 517 aaKnown RBP13.76□□□□□ -0.21
CLN3-226ENST00000567160 WDR18Q9BV38 432 aa13.76□□□□□ -0.21
CLN3-226ENST00000567160 LRRCC1Q9C099 1032 aa13.76□□□□□ -0.21
CLN3-226ENST00000567160 TXNRD2Q9NNW7 524 aa13.76□□□□□ -0.21
CLN3-226ENST00000567160 ZBTB47Q9UFB7 747 aaPredicted RBP13.76□□□□□ -0.21
CLN3-226ENST00000567160 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.76□□□□□ -0.21
CLN3-226ENST00000567160 FAM196BA6NMK8 535 aa13.75□□□□□ -0.21
CLN3-226ENST00000567160 C19orf81C9J6K1 198 aa13.75□□□□□ -0.21
CLN3-226ENST00000567160 MAP4K4O95819 1239 aaPredicted RBP13.75□□□□□ -0.21
CLN3-226ENST00000567160 CCNA1P78396 465 aa13.75□□□□□ -0.21
CLN3-226ENST00000567160 ATP2B3Q16720 1220 aa13.75□□□□□ -0.21
CLN3-226ENST00000567160 SLC39A5Q6ZMH5 540 aa13.75□□□□□ -0.21
CLN3-226ENST00000567160 USP38Q8NB14 1042 aa13.75□□□□□ -0.21
CLN3-226ENST00000567160 PAGR1Q9BTK6 254 aa13.75□□□□□ -0.21
CLN3-226ENST00000567160 PORCNQ9H237 461 aa13.75□□□□□ -0.21
CLN3-226ENST00000567160 RBPJLQ9UBG7 517 aa13.75□□□□□ -0.21
CLN3-226ENST00000567160 HERC5Q9UII4 1024 aaKnown RBP13.75□□□□□ -0.21
CLN3-226ENST00000567160 MROH7-TTC4A0A0A0MT08 1334 aa13.74□□□□□ -0.21
CLN3-226ENST00000567160 ASNSP08243 561 aa13.74□□□□□ -0.21
CLN3-226ENST00000567160 ATP2B2Q01814 1243 aa13.74□□□□□ -0.21
CLN3-226ENST00000567160 GRIN2CQ14957 1233 aa13.74□□□□□ -0.21
CLN3-226ENST00000567160 ADAMTS19Q8TE59 1207 aa13.74□□□□□ -0.21
CLN3-226ENST00000567160 ASB2Q96Q27 587 aa13.74□□□□□ -0.21
CLN3-226ENST00000567160 UHRF1Q96T88 793 aaPredicted RBP13.74□□□□□ -0.21
CLN3-226ENST00000567160 GAS2L1Q99501 681 aaPredicted RBP13.74□□□□□ -0.21
CLN3-226ENST00000567160 C1QTNF1Q9BXJ1 281 aa13.74□□□□□ -0.21
CLN3-226ENST00000567160 LNPKQ9C0E8 428 aa13.74□□□□□ -0.21
CLN3-226ENST00000567160 THEGQ9P2T0 379 aa13.74□□□□□ -0.21
CLN3-226ENST00000567160 ABCF2Q9UG63 623 aa13.74□□□□□ -0.21
CLN3-226ENST00000567160 ZBTB22O15209 634 aa13.73□□□□□ -0.21
CLN3-226ENST00000567160 PEX10O60683 326 aa13.73□□□□□ -0.21
CLN3-226ENST00000567160 DNAJB2P25686 324 aa13.73□□□□□ -0.21
CLN3-226ENST00000567160 MRPS5P82675 430 aaKnown RBP13.73□□□□□ -0.21
CLN3-226ENST00000567160 Q3C1V9 767 aa13.73□□□□□ -0.21
CLN3-226ENST00000567160 TRIM60Q495X7 471 aa13.73□□□□□ -0.21
CLN3-226ENST00000567160 TNNI3KQ59H18 835 aa13.73□□□□□ -0.21
CLN3-226ENST00000567160 GJC2Q5T442 439 aaPredicted RBP13.73□□□□□ -0.21
CLN3-226ENST00000567160 PDLIM7Q9NR12 457 aa13.73□□□□□ -0.21
CLN3-226ENST00000567160 ARIH1Q9Y4X5 557 aaPredicted RBP13.73□□□□□ -0.21
CLN3-226ENST00000567160 IVNS1ABPQ9Y6Y0 642 aa13.73□□□□□ -0.21
CLN3-226ENST00000567160 FPGT-TNNI3KV9GXZ4 949 aa13.73□□□□□ -0.21
CLN3-226ENST00000567160 PDS5AQ29RF7 1337 aaKnown RBP13.72□□□□□ -0.21
CLN3-226ENST00000567160 BDP1A6H8Y1 2624 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 GPR75-ASB3A0A0A6YYF3 556 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.72□□□□□ -0.21
CLN3-226ENST00000567160 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.72□□□□□ -0.21
CLN3-226ENST00000567160 SLC15A5A6NIM6 579 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 USP17L10C9JJH3 530 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 TIMM10P62072 90 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 NUCB1Q02818 461 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 SNX17Q15036 470 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 WDR78Q5VTH9 848 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 AACSQ86V21 672 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 CHD1LQ86WJ1 897 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 CLASRPQ8N2M8 674 aaKnown RBP13.72□□□□□ -0.21
CLN3-226ENST00000567160 NEUROD6Q96NK8 337 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 CCDC8Q9H0W5 538 aaPredicted RBP13.72□□□□□ -0.21
CLN3-226ENST00000567160 ZNF576Q9H609 170 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 GINM1Q9NU53 330 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 AKAP2Q9Y2D5 859 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 MYO9BQ13459 2157 aa13.72□□□□□ -0.21
CLN3-226ENST00000567160 A0A1B0GUL7 405 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 PHKA1P46020 1223 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 RHBDL3P58872 404 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 AKNAD1Q5T1N1 836 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 C1orf53Q5VUE5 145 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 EAF2Q96CJ1 260 aaPredicted RBP13.71□□□□□ -0.21
CLN3-226ENST00000567160 GPR108Q9NPR9 543 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 FLRT1Q9NZU1 646 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 PI4KBQ9UBF8 816 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 RABGAP1Q9Y3P9 1069 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 HCN4Q9Y3Q4 1203 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 TACC3Q9Y6A5 838 aa13.71□□□□□ -0.21
CLN3-226ENST00000567160 MYO5AQ9Y4I1 1855 aaKnown RBP13.71□□□□□ -0.21
CLN3-226ENST00000567160 TRIM43BA6NCK2 446 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 MYCNP04198 464 aaPredicted RBP13.7□□□□□ -0.22
CLN3-226ENST00000567160 LDHCP07864 332 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 HOXC6P09630 235 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 IFIT2P09913 472 aaKnown RBP13.7□□□□□ -0.22
CLN3-226ENST00000567160 ADORA1P30542 326 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 GSTO1P78417 241 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 ERICH6Q7L0X2 663 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 SKAP1Q86WV1 359 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 PPM1EQ8WY54 764 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 TRIM43Q96BQ3 446 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms