RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 PLCG2P16885 1265 aa20.73■□□□□ 0.91
CDH3-205ENST00000566808 PLA2G5P39877 138 aa20.73■□□□□ 0.91
CDH3-205ENST00000566808 C1orf53Q5VUE5 145 aa20.73■□□□□ 0.91
CDH3-205ENST00000566808 PI16Q6UXB8 463 aa20.73■□□□□ 0.91
CDH3-205ENST00000566808 MYO9BQ13459 2157 aa20.73■□□□□ 0.91
CDH3-205ENST00000566808 FLT1P17948 1338 aa20.73■□□□□ 0.91
CDH3-205ENST00000566808 A0A0G2JMZ2 1700 aa20.73■□□□□ 0.91
CDH3-205ENST00000566808 MYH1P12882 1939 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 USP17L15C9J2P7 530 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 USP17L13C9JLJ4 530 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 USP17L11C9JVI0 530 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 USP17L18D6R9N7 530 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 USP17L22D6RA61 530 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 USP17L17D6RBQ6 530 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 USP17L19D6RCP7 530 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 USP17L20D6RJB6 530 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 USP17L24Q0WX57 530 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 LBX2Q6XYB7 198 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 FOXP4Q8IVH2 680 aaPredicted RBP20.72■□□□□ 0.91
CDH3-205ENST00000566808 NPLOC4Q8TAT6 608 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 SSH1Q8WYL5 1049 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 FEZ1Q99689 392 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 HDAC5Q9UQL6 1122 aa20.72■□□□□ 0.91
CDH3-205ENST00000566808 TRIM43BA6NCK2 446 aa20.71■□□□□ 0.91
CDH3-205ENST00000566808 BAG3O95817 575 aa20.71■□□□□ 0.91
CDH3-205ENST00000566808 TBC1D9Q6ZT07 1266 aa20.71■□□□□ 0.91
CDH3-205ENST00000566808 TRIM43Q96BQ3 446 aaPredicted RBP20.71■□□□□ 0.91
CDH3-205ENST00000566808 DNAJB2P25686 324 aa20.7■□□□□ 0.9
CDH3-205ENST00000566808 ARID4AP29374 1257 aaPredicted RBP20.7■□□□□ 0.9
CDH3-205ENST00000566808 OLFML2BQ68BL8 750 aa20.7■□□□□ 0.9
CDH3-205ENST00000566808 SH3RF1Q7Z6J0 888 aa20.7■□□□□ 0.9
CDH3-205ENST00000566808 MAPKAPK5Q8IW41 473 aa20.7■□□□□ 0.9
CDH3-205ENST00000566808 RAPGEFL1Q9UHV5 662 aa20.7■□□□□ 0.9
CDH3-205ENST00000566808 SEPT4O43236 478 aa20.69■□□□□ 0.9
CDH3-205ENST00000566808 USP14P54578 494 aa20.69■□□□□ 0.9
CDH3-205ENST00000566808 TFCP2Q12800 502 aa20.69■□□□□ 0.9
CDH3-205ENST00000566808 GRIN2CQ14957 1233 aa20.69■□□□□ 0.9
CDH3-205ENST00000566808 ATF7IPQ6VMQ6 1270 aa20.69■□□□□ 0.9
CDH3-205ENST00000566808 TGFBRAP1Q8WUH2 860 aa20.69■□□□□ 0.9
CDH3-205ENST00000566808 AATFQ9NY61 560 aaKnown RBP eCLIP20.69■□□□□ 0.9
CDH3-205ENST00000566808 LRP2BPQ9P2M1 347 aa20.69■□□□□ 0.9
CDH3-205ENST00000566808 MYO5AQ9Y4I1 1855 aaKnown RBP20.69■□□□□ 0.9
CDH3-205ENST00000566808 GH2P01242 217 aa20.68■□□□□ 0.9
CDH3-205ENST00000566808 HLA-DOAP06340 250 aa20.68■□□□□ 0.9
CDH3-205ENST00000566808 VCAM1P19320 739 aa20.68■□□□□ 0.9
CDH3-205ENST00000566808 ZYXQ15942 572 aaKnown RBP20.68■□□□□ 0.9
CDH3-205ENST00000566808 GORABQ5T7V8 394 aa20.68■□□□□ 0.9
CDH3-205ENST00000566808 CATSPERGQ6ZRH7 1159 aa20.68■□□□□ 0.9
CDH3-205ENST00000566808 ATXN2LQ8WWM7 1075 aaKnown RBP20.68■□□□□ 0.9
CDH3-205ENST00000566808 BTBD7Q9P203 1132 aa20.68■□□□□ 0.9
CDH3-205ENST00000566808 PALD1Q9ULE6 856 aa20.68■□□□□ 0.9
CDH3-205ENST00000566808 TACC3Q9Y6A5 838 aa20.68■□□□□ 0.9
CDH3-205ENST00000566808 MYCNP04198 464 aaPredicted RBP20.67■□□□□ 0.9
CDH3-205ENST00000566808 CLTBP09497 229 aa20.67■□□□□ 0.9
CDH3-205ENST00000566808 ADCYAP1R1P41586 468 aa20.67■□□□□ 0.9
CDH3-205ENST00000566808 PPP4CP60510 307 aa20.67■□□□□ 0.9
CDH3-205ENST00000566808 NAA16Q6N069 864 aaPredicted RBP20.67■□□□□ 0.9
CDH3-205ENST00000566808 DPP9Q86TI2 863 aa20.67■□□□□ 0.9
CDH3-205ENST00000566808 FAM122AQ96E09 287 aa20.67■□□□□ 0.9
CDH3-205ENST00000566808 NEUROD6Q96NK8 337 aa20.67■□□□□ 0.9
CDH3-205ENST00000566808 KIAA1683Q9H0B3 1180 aa20.67■□□□□ 0.9
CDH3-205ENST00000566808 ZNF521Q96K83 1311 aa20.67■□□□□ 0.9
CDH3-205ENST00000566808 SPDYE16A6NNV3 312 aaPredicted RBP20.66■□□□□ 0.9
CDH3-205ENST00000566808 ADORA2AP29274 412 aa20.66■□□□□ 0.9
CDH3-205ENST00000566808 MCAMP43121 646 aa20.66■□□□□ 0.9
CDH3-205ENST00000566808 TLE2Q04725 743 aa20.66■□□□□ 0.9
CDH3-205ENST00000566808 LRRC41Q15345 812 aa20.66■□□□□ 0.9
CDH3-205ENST00000566808 ANO1Q5XXA6 986 aa20.66■□□□□ 0.9
CDH3-205ENST00000566808 THEGQ9P2T0 379 aa20.66■□□□□ 0.9
CDH3-205ENST00000566808 CHD7Q9P2D1 2997 aa20.65■□□□□ 0.9
CDH3-205ENST00000566808 SMCHD1A6NHR9 2005 aa20.65■□□□□ 0.9
CDH3-205ENST00000566808 KIAA0355O15063 1070 aa20.65■□□□□ 0.9
CDH3-205ENST00000566808 ITGB8P26012 769 aa20.65■□□□□ 0.9
CDH3-205ENST00000566808 EPHB4P54760 987 aa20.65■□□□□ 0.9
CDH3-205ENST00000566808 FPGSQ05932 587 aa20.65■□□□□ 0.9
CDH3-205ENST00000566808 FERMT2Q96AC1 680 aa20.65■□□□□ 0.9
CDH3-205ENST00000566808 TIFAQ96CG3 184 aa20.65■□□□□ 0.9
CDH3-205ENST00000566808 ZNF576Q9H609 170 aa20.65■□□□□ 0.9
CDH3-205ENST00000566808 PIEZO1Q92508 2521 aa20.65■□□□□ 0.9
CDH3-205ENST00000566808 PLXNA1Q9UIW2 1896 aa20.64■□□□□ 0.9
CDH3-205ENST00000566808 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.64■□□□□ 0.89
CDH3-205ENST00000566808 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.64■□□□□ 0.89
CDH3-205ENST00000566808 STRNO43815 780 aa20.64■□□□□ 0.89
CDH3-205ENST00000566808 UQCRFS1P1P0C7P4 283 aa20.64■□□□□ 0.89
CDH3-205ENST00000566808 RAG1P15918 1043 aa20.64■□□□□ 0.89
CDH3-205ENST00000566808 ALDH1L2Q3SY69 923 aa20.64■□□□□ 0.89
CDH3-205ENST00000566808 FAM47AQ5JRC9 791 aa20.64■□□□□ 0.89
CDH3-205ENST00000566808 ADAMTS19Q8TE59 1207 aa20.64■□□□□ 0.89
CDH3-205ENST00000566808 GAS2L1Q99501 681 aaPredicted RBP20.64■□□□□ 0.89
CDH3-205ENST00000566808 SAP30BPQ9UHR5 308 aaKnown RBP20.64■□□□□ 0.89
CDH3-205ENST00000566808 PHF24Q9UPV7 400 aa20.64■□□□□ 0.89
CDH3-205ENST00000566808 ROBO3Q96MS0 1386 aa20.63■□□□□ 0.89
CDH3-205ENST00000566808 AKNAD1Q5T1N1 836 aa20.63■□□□□ 0.89
CDH3-205ENST00000566808 TATDN1Q6P1N9 297 aa20.63■□□□□ 0.89
CDH3-205ENST00000566808 ASB2Q96Q27 587 aa20.63■□□□□ 0.89
CDH3-205ENST00000566808 RPAP3Q9H6T3 665 aaPredicted RBP20.63■□□□□ 0.89
CDH3-205ENST00000566808 SLC5A4Q9NY91 659 aa20.63■□□□□ 0.89
CDH3-205ENST00000566808 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.63■□□□□ 0.89
CDH3-205ENST00000566808 ZNFX1Q9P2E3 1918 aaKnown RBP20.63■□□□□ 0.89
CDH3-205ENST00000566808 SRGAP3O43295 1099 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms