RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 SLF2Q8IX21 1173 aa20.74■□□□□ 0.91
CLK3-217ENST00000566126 ZNF384Q8TF68 577 aa20.74■□□□□ 0.91
CLK3-217ENST00000566126 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.74■□□□□ 0.912e-8■■■□□ 17.3
CLK3-217ENST00000566126 C11orf16Q9NQ32 467 aa20.74■□□□□ 0.91
CLK3-217ENST00000566126 EMILIN3Q9NT22 766 aa20.74■□□□□ 0.91
CLK3-217ENST00000566126 SEPT4O43236 478 aa20.73■□□□□ 0.91
CLK3-217ENST00000566126 ASNSP08243 561 aa20.73■□□□□ 0.91
CLK3-217ENST00000566126 RFX5P48382 616 aaPredicted RBP20.73■□□□□ 0.91
CLK3-217ENST00000566126 KCNQ1P51787 676 aa20.73■□□□□ 0.91
CLK3-217ENST00000566126 CCNA1P78396 465 aa20.73■□□□□ 0.91
CLK3-217ENST00000566126 ABCF2Q9UG63 623 aa20.73■□□□□ 0.91
CLK3-217ENST00000566126 HERC5Q9UII4 1024 aaKnown RBP20.73■□□□□ 0.91
CLK3-217ENST00000566126 IL16Q14005 1332 aa20.73■□□□□ 0.91
CLK3-217ENST00000566126 GBF1Q92538 1859 aa20.73■□□□□ 0.91
CLK3-217ENST00000566126 SMCHD1A6NHR9 2005 aa20.72■□□□□ 0.91
CLK3-217ENST00000566126 ZBTB22O15209 634 aa20.72■□□□□ 0.91
CLK3-217ENST00000566126 ATP2B3Q16720 1220 aa20.72■□□□□ 0.91
CLK3-217ENST00000566126 PHF24Q9UPV7 400 aa20.72■□□□□ 0.91
CLK3-217ENST00000566126 ZNF236Q9UL36 1845 aa20.71■□□□□ 0.91
CLK3-217ENST00000566126 FAM47AQ5JRC9 791 aa20.71■□□□□ 0.91
CLK3-217ENST00000566126 RASIP1Q5U651 963 aa20.71■□□□□ 0.91
CLK3-217ENST00000566126 CCDC129Q6ZRS4 1044 aa20.71■□□□□ 0.91
CLK3-217ENST00000566126 C16orf59Q7L2K0 433 aa20.71■□□□□ 0.91
CLK3-217ENST00000566126 TRANK1O15050 2925 aa20.71■□□□□ 0.91
CLK3-217ENST00000566126 PQBP1O60828 265 aaKnown RBP20.7■□□□□ 0.9
CLK3-217ENST00000566126 MECOMQ03112 1051 aa20.7■□□□□ 0.9
CLK3-217ENST00000566126 EXOSC9Q06265 439 aaKnown RBP20.7■□□□□ 0.9
CLK3-217ENST00000566126 OLFML2BQ68BL8 750 aa20.7■□□□□ 0.9
CLK3-217ENST00000566126 DNAJC18Q9H819 358 aa20.7■□□□□ 0.9
CLK3-217ENST00000566126 TMEM39AQ9NV64 488 aa20.7■□□□□ 0.9
CLK3-217ENST00000566126 BTBD7Q9P203 1132 aa20.7■□□□□ 0.9
CLK3-217ENST00000566126 IVNS1ABPQ9Y6Y0 642 aa20.7■□□□□ 0.9
CLK3-217ENST00000566126 GPR37L1O60883 481 aa20.69■□□□□ 0.9
CLK3-217ENST00000566126 FAAP100Q0VG06 881 aa20.69■□□□□ 0.9
CLK3-217ENST00000566126 RASGRF1Q13972 1273 aa20.69■□□□□ 0.9
CLK3-217ENST00000566126 KHSRPQ92945 711 aaKnown RBP eCLIP20.69■□□□□ 0.9
CLK3-217ENST00000566126 TSPYL2Q9H2G4 693 aaPredicted RBP20.69■□□□□ 0.9
CLK3-217ENST00000566126 NCBP3Q53F19 620 aaKnown RBP20.68■□□□□ 0.9
CLK3-217ENST00000566126 TMEM240Q5SV17 173 aa20.68■□□□□ 0.9
CLK3-217ENST00000566126 PRAMEF19Q5SWL8 479 aa20.68■□□□□ 0.9
CLK3-217ENST00000566126 CCDC102BQ68D86 513 aa20.68■□□□□ 0.9
CLK3-217ENST00000566126 USP17L2Q6R6M4 530 aa20.68■□□□□ 0.9
CLK3-217ENST00000566126 FAM86C2PA6NEL3 165 aa20.67■□□□□ 0.9
CLK3-217ENST00000566126 GDF11O95390 407 aa20.67■□□□□ 0.9
CLK3-217ENST00000566126 MAP4K4O95819 1239 aaPredicted RBP20.67■□□□□ 0.9
CLK3-217ENST00000566126 ADORA1P30542 326 aa20.67■□□□□ 0.9
CLK3-217ENST00000566126 AAK1Q2M2I8 961 aa20.67■□□□□ 0.9
CLK3-217ENST00000566126 SLC44A5Q8NCS7 719 aa20.67■□□□□ 0.9
CLK3-217ENST00000566126 PI4KBQ9UBF8 816 aa20.67■□□□□ 0.9
CLK3-217ENST00000566126 ZBTB21Q9ULJ3 1066 aa20.67■□□□□ 0.9
CLK3-217ENST00000566126 USP17L15C9J2P7 530 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 USP17L13C9JLJ4 530 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 USP17L11C9JVI0 530 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 USP17L18D6R9N7 530 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 USP17L22D6RA61 530 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 USP17L17D6RBQ6 530 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 USP17L19D6RCP7 530 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 USP17L20D6RJB6 530 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 TIMP1P01033 207 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 MRE11P49959 708 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 USP17L24Q0WX57 530 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 SPTY2D1Q68D10 685 aaPredicted RBP20.66■□□□□ 0.9
CLK3-217ENST00000566126 DPP9Q86TI2 863 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 C12orf42Q96LP6 360 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 PDS5AQ29RF7 1337 aaKnown RBP20.66■□□□□ 0.9
CLK3-217ENST00000566126 LRRC37A2A6NM11 1700 aa20.66■□□□□ 0.9
CLK3-217ENST00000566126 A0A1W2PQ45 241 aaPredicted RBP20.65■□□□□ 0.9
CLK3-217ENST00000566126 A0A1W2PQY0 241 aa20.65■□□□□ 0.9
CLK3-217ENST00000566126 ADORA2AP29274 412 aa20.65■□□□□ 0.9
CLK3-217ENST00000566126 LBX2Q6XYB7 198 aa20.65■□□□□ 0.9
CLK3-217ENST00000566126 CATSPERGQ6ZRH7 1159 aa20.65■□□□□ 0.9
CLK3-217ENST00000566126 ANKRD33Q7Z3H0 272 aa20.65■□□□□ 0.9
CLK3-217ENST00000566126 TOX2Q96NM4 488 aa20.65■□□□□ 0.9
CLK3-217ENST00000566126 NKX2-4Q9H2Z4 354 aa20.65■□□□□ 0.9
CLK3-217ENST00000566126 ERC2O15083 957 aa20.64■□□□□ 0.89
CLK3-217ENST00000566126 COBLO75128 1261 aa20.64■□□□□ 0.89
CLK3-217ENST00000566126 MFSD5Q6N075 450 aa20.64■□□□□ 0.89
CLK3-217ENST00000566126 ERICH6Q7L0X2 663 aa20.64■□□□□ 0.89
CLK3-217ENST00000566126 METTL16Q86W50 562 aaKnown RBP20.64■□□□□ 0.89
CLK3-217ENST00000566126 MICALL1Q8N3F8 863 aa20.64■□□□□ 0.89
CLK3-217ENST00000566126 GINM1Q9NU53 330 aa20.64■□□□□ 0.89
CLK3-217ENST00000566126 CEP126Q9P2H0 1117 aa20.64■□□□□ 0.89
CLK3-217ENST00000566126 MSRAQ9UJ68 235 aa20.64■□□□□ 0.89
CLK3-217ENST00000566126 TBX21Q9UL17 535 aa20.64■□□□□ 0.89
CLK3-217ENST00000566126 CDK5RAP2Q96SN8 1893 aa20.64■□□□□ 0.89
CLK3-217ENST00000566126 RAB30Q15771 203 aa20.63■□□□□ 0.89
CLK3-217ENST00000566126 ZYXQ15942 572 aaKnown RBP20.63■□□□□ 0.89
CLK3-217ENST00000566126 TEX11Q8IYF3 940 aa20.63■□□□□ 0.89
CLK3-217ENST00000566126 SIL1Q9H173 461 aa20.63■□□□□ 0.89
CLK3-217ENST00000566126 XPNPEP3Q9NQH7 507 aa20.63■□□□□ 0.89
CLK3-217ENST00000566126 YBX2Q9Y2T7 364 aaKnown RBP20.63■□□□□ 0.89
CLK3-217ENST00000566126 PRRC2BQ5JSZ5 2229 aaKnown RBP20.63■□□□□ 0.89
CLK3-217ENST00000566126 SPDYE16A6NNV3 312 aaPredicted RBP20.62■□□□□ 0.89
CLK3-217ENST00000566126 PGK1P00558 417 aa20.62■□□□□ 0.89
CLK3-217ENST00000566126 PPIGQ13427 754 aaKnown RBP eCLIP20.62■□□□□ 0.894e-9■■■□□ 15.8
CLK3-217ENST00000566126 NSUN4Q96CB9 384 aaKnown RBP20.62■□□□□ 0.89
CLK3-217ENST00000566126 TLL1O43897 1013 aa20.61■□□□□ 0.89
CLK3-217ENST00000566126 CIAO1O76071 339 aa20.61■□□□□ 0.89
CLK3-217ENST00000566126 ZNF365Q70YC5 407 aa20.61■□□□□ 0.89
CLK3-217ENST00000566126 SH3RF3Q8TEJ3 882 aaPredicted RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms