RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 PRKCZQ05513 592 aa22.09■■□□□ 1.13
CLN3-221ENST00000566057 FAM110CQ1W6H9 321 aa22.09■■□□□ 1.13
CLN3-221ENST00000566057 NBPF11Q86T75 865 aa22.09■■□□□ 1.13
CLN3-221ENST00000566057 ZBTB47Q9UFB7 747 aaPredicted RBP22.09■■□□□ 1.13
CLN3-221ENST00000566057 SWAP70Q9UH65 585 aa22.09■■□□□ 1.13
CLN3-221ENST00000566057 PEX10O60683 326 aa22.08■■□□□ 1.13
CLN3-221ENST00000566057 IGHDP01880 384 aa22.08■■□□□ 1.13
CLN3-221ENST00000566057 CDK8P49336 464 aa22.08■■□□□ 1.13
CLN3-221ENST00000566057 IRX3P78415 501 aaPredicted RBP22.08■■□□□ 1.13
CLN3-221ENST00000566057 DDRGK1Q96HY6 314 aa22.08■■□□□ 1.13
CLN3-221ENST00000566057 FEZ1Q99689 392 aa22.08■■□□□ 1.13
CLN3-221ENST00000566057 KIAA1683Q9H0B3 1180 aa22.08■■□□□ 1.13
CLN3-221ENST00000566057 STAP2Q9UGK3 403 aa22.08■■□□□ 1.13
CLN3-221ENST00000566057 MKI67P46013 3256 aaKnown RBP22.07■■□□□ 1.12
CLN3-221ENST00000566057 GPAA1O43292 621 aa22.07■■□□□ 1.12
CLN3-221ENST00000566057 MYCP01106 439 aaPredicted RBP22.07■■□□□ 1.12
CLN3-221ENST00000566057 PDE1AP54750 535 aa22.07■■□□□ 1.12
CLN3-221ENST00000566057 POTEEQ6S8J3 1075 aa22.07■■□□□ 1.12
CLN3-221ENST00000566057 RAET1EQ8TD07 263 aa22.07■■□□□ 1.12
CLN3-221ENST00000566057 C12orf42Q96LP6 360 aa22.07■■□□□ 1.12
CLN3-221ENST00000566057 SEC62Q99442 399 aaKnown RBP22.07■■□□□ 1.12
CLN3-221ENST00000566057 RWDD1Q9H446 243 aaPredicted RBP22.07■■□□□ 1.12
CLN3-221ENST00000566057 PLXNB2O15031 1838 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 A0A1W2PRG0 241 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 AKR1B1P15121 316 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 HERVK_113P62684 666 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 C16orf86Q6ZW13 317 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 SMC5Q8IY18 1101 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 AMOTL1Q8IY63 956 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 FSD1Q9BTV5 496 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 TXNRD2Q9NNW7 524 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 MORF4L1Q9UBU8 362 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 TAOK2Q9UL54 1235 aa22.06■■□□□ 1.12
CLN3-221ENST00000566057 TNPO2O14787 897 aaKnown RBP22.05■■□□□ 1.12
CLN3-221ENST00000566057 FLT3LGP49771 235 aa22.05■■□□□ 1.12
CLN3-221ENST00000566057 USP14P54578 494 aa22.05■■□□□ 1.12
CLN3-221ENST00000566057 B4GALNT3Q6L9W6 998 aa22.05■■□□□ 1.12
CLN3-221ENST00000566057 SIAH1Q8IUQ4 282 aa22.05■■□□□ 1.12
CLN3-221ENST00000566057 LNPKQ9C0E8 428 aa22.05■■□□□ 1.12
CLN3-221ENST00000566057 RBPJLQ9UBG7 517 aa22.05■■□□□ 1.12
CLN3-221ENST00000566057 VCAM1P19320 739 aa22.04■■□□□ 1.12
CLN3-221ENST00000566057 EN2P19622 333 aaPredicted RBP22.04■■□□□ 1.12
CLN3-221ENST00000566057 GRK4P32298 578 aa22.04■■□□□ 1.12
CLN3-221ENST00000566057 LRRFIP1Q32MZ4 808 aaKnown RBP22.04■■□□□ 1.12
CLN3-221ENST00000566057 SBK1Q52WX2 424 aa22.04■■□□□ 1.12
CLN3-221ENST00000566057 GIMAP6Q6P9H5 292 aa22.04■■□□□ 1.12
CLN3-221ENST00000566057 TMEM179Q6ZVK1 233 aa22.04■■□□□ 1.12
CLN3-221ENST00000566057 CLEC10AQ8IUN9 316 aa22.04■■□□□ 1.12
CLN3-221ENST00000566057 EPB41L4AQ9HCS5 686 aaPredicted RBP22.04■■□□□ 1.12
CLN3-221ENST00000566057 ARPP21Q9UBL0 812 aaPredicted RBP22.04■■□□□ 1.12
CLN3-221ENST00000566057 RLFQ13129 1914 aa22.04■■□□□ 1.12
CLN3-221ENST00000566057 USP17L15C9J2P7 530 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 USP17L13C9JLJ4 530 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 USP17L11C9JVI0 530 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 USP17L18D6R9N7 530 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 USP17L22D6RA61 530 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 USP17L17D6RBQ6 530 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 USP17L19D6RCP7 530 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 USP17L20D6RJB6 530 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 USP17L24Q0WX57 530 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 ZMYM1Q5SVZ6 1142 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 CATSPERGQ6ZRH7 1159 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 STK11IPQ8N1F8 1099 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 TMEM106CQ9BVX2 250 aa22.03■■□□□ 1.12
CLN3-221ENST00000566057 GREB1LQ9C091 1923 aaPredicted RBP22.02■■□□□ 1.12
CLN3-221ENST00000566057 MINDY4BA8MYZ0 360 aa22.02■■□□□ 1.12
CLN3-221ENST00000566057 MTFR1Q15390 333 aa22.02■■□□□ 1.12
CLN3-221ENST00000566057 Q3C1V9 767 aa22.02■■□□□ 1.12
CLN3-221ENST00000566057 KIAA1755Q5JYT7 1200 aa22.02■■□□□ 1.12
CLN3-221ENST00000566057 COA7Q96BR5 231 aa22.02■■□□□ 1.12
CLN3-221ENST00000566057 CCDC17Q96LX7 622 aa22.02■■□□□ 1.12
CLN3-221ENST00000566057 PATL2C9JE40 543 aaKnown RBP22.01■■□□□ 1.11
CLN3-221ENST00000566057 ADCY3O60266 1144 aa22.01■■□□□ 1.11
CLN3-221ENST00000566057 APPP05067 770 aa22.01■■□□□ 1.11
CLN3-221ENST00000566057 GNAT2P19087 354 aa22.01■■□□□ 1.11
CLN3-221ENST00000566057 IFNL3Q8IZI9 196 aa22.01■■□□□ 1.11
CLN3-221ENST00000566057 GPRC5AQ8NFJ5 357 aa22.01■■□□□ 1.11
CLN3-221ENST00000566057 RPAP3Q9H6T3 665 aaPredicted RBP22.01■■□□□ 1.11
CLN3-221ENST00000566057 GJD2Q9UKL4 321 aa22.01■■□□□ 1.11
CLN3-221ENST00000566057 ELNP15502 786 aa22■■□□□ 1.11
CLN3-221ENST00000566057 ERVK-9P63128 1117 aa22■■□□□ 1.11
CLN3-221ENST00000566057 ERVK-24P63145 666 aa22■■□□□ 1.11
CLN3-221ENST00000566057 IRF5Q13568 498 aa22■■□□□ 1.11
CLN3-221ENST00000566057 CHD1LQ86WJ1 897 aa22■■□□□ 1.11
CLN3-221ENST00000566057 EVI5LQ96CN4 794 aa22■■□□□ 1.11
CLN3-221ENST00000566057 PAGR1Q9BTK6 254 aa22■■□□□ 1.11
CLN3-221ENST00000566057 PARP14Q460N5 1801 aa22■■□□□ 1.11
CLN3-221ENST00000566057 CNMDO75829 334 aa21.99■■□□□ 1.11
CLN3-221ENST00000566057 TDO2P48775 406 aa21.99■■□□□ 1.11
CLN3-221ENST00000566057 IRX6P78412 446 aaPredicted RBP21.99■■□□□ 1.11
CLN3-221ENST00000566057 NUCB1Q02818 461 aa21.99■■□□□ 1.11
CLN3-221ENST00000566057 ICA1Q05084 483 aa21.99■■□□□ 1.11
CLN3-221ENST00000566057 CCDC129Q6ZRS4 1044 aa21.99■■□□□ 1.11
CLN3-221ENST00000566057 SLAIN1Q8ND83 568 aa21.99■■□□□ 1.11
CLN3-221ENST00000566057 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.99■■□□□ 1.11
CLN3-221ENST00000566057 BIN2Q9UBW5 565 aaPredicted RBP21.99■■□□□ 1.11
CLN3-221ENST00000566057 TMX2Q9Y320 296 aa21.99■■□□□ 1.11
CLN3-221ENST00000566057 ROBO3Q96MS0 1386 aa21.99■■□□□ 1.11
CLN3-221ENST00000566057 MYH4Q9Y623 1939 aa21.98■■□□□ 1.11
CLN3-221ENST00000566057 RASA1P20936 1047 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms