RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SLAIN1Q8ND83 568 aa17.93■□□□□ 0.46
CLN3-213ENST00000565047 SHISA4Q96DD7 197 aa17.93■□□□□ 0.46
CLN3-213ENST00000565047 SWAP70Q9UH65 585 aa17.93■□□□□ 0.46
CLN3-213ENST00000565047 TTC41PQ6P2S7 1318 aa17.93■□□□□ 0.46
CLN3-213ENST00000565047 USP17L12C9JPN9 530 aa17.92■□□□□ 0.46
CLN3-213ENST00000565047 USP17L21D6R901 530 aa17.92■□□□□ 0.46
CLN3-213ENST00000565047 ADCY3O60266 1144 aa17.92■□□□□ 0.46
CLN3-213ENST00000565047 CNMDO75829 334 aa17.92■□□□□ 0.46
CLN3-213ENST00000565047 MYCP01106 439 aaPredicted RBP17.92■□□□□ 0.46
CLN3-213ENST00000565047 IRX3P78415 501 aaPredicted RBP17.92■□□□□ 0.46
CLN3-213ENST00000565047 HDAC1Q13547 482 aaPredicted RBP17.92■□□□□ 0.46
CLN3-213ENST00000565047 CTR9Q6PD62 1173 aa17.92■□□□□ 0.46
CLN3-213ENST00000565047 CATSPERGQ6ZRH7 1159 aa17.92■□□□□ 0.46
CLN3-213ENST00000565047 CABP5Q9NP86 173 aa17.92■□□□□ 0.46
CLN3-213ENST00000565047 PLXNB2O15031 1838 aa17.92■□□□□ 0.46
CLN3-213ENST00000565047 GSG1L2A8MUP6 293 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 RNF113AO15541 343 aaKnown RBP17.91■□□□□ 0.46
CLN3-213ENST00000565047 CCL5P13501 91 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 ELNP15502 786 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 VCAM1P19320 739 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 USP14P54578 494 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 KIAA1755Q5JYT7 1200 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 PRPF38BQ5VTL8 546 aaKnown RBP17.91■□□□□ 0.46
CLN3-213ENST00000565047 C16orf86Q6ZW13 317 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 UBE2Q1Q7Z7E8 422 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 APPBP2Q92624 585 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 COA7Q96BR5 231 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 YTHDC1Q96MU7 727 aaKnown RBP17.91■□□□□ 0.46
CLN3-213ENST00000565047 SLC4A4Q9Y6R1 1079 aa17.91■□□□□ 0.46
CLN3-213ENST00000565047 BAZ2AQ9UIF9 1905 aaKnown RBP17.91■□□□□ 0.46
CLN3-213ENST00000565047 USP17L15C9J2P7 530 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 USP17L13C9JLJ4 530 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 USP17L11C9JVI0 530 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 USP17L18D6R9N7 530 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 USP17L22D6RA61 530 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 USP17L17D6RBQ6 530 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 USP17L19D6RCP7 530 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 USP17L20D6RJB6 530 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 GJB1P08034 283 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 AKR1B1P15121 316 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 GJA8P48165 433 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 CDK8P49336 464 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 USP17L24Q0WX57 530 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 ZYXQ15942 572 aaKnown RBP17.9■□□□□ 0.46
CLN3-213ENST00000565047 SBK1Q52WX2 424 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 LBX2Q6XYB7 198 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 TMEM179Q6ZVK1 233 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 GPRC5AQ8NFJ5 357 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 GPATCH3Q96I76 525 aa17.9■□□□□ 0.46
CLN3-213ENST00000565047 ERVK-9P63128 1117 aa17.89■□□□□ 0.45
CLN3-213ENST00000565047 ERVK-24P63145 666 aa17.89■□□□□ 0.45
CLN3-213ENST00000565047 GIMAP6Q6P9H5 292 aa17.89■□□□□ 0.45
CLN3-213ENST00000565047 GTF3C2Q8WUA4 911 aaPredicted RBP17.89■□□□□ 0.45
CLN3-213ENST00000565047 USP6NLQ92738 828 aa17.89■□□□□ 0.45
CLN3-213ENST00000565047 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.89■□□□□ 0.45
CLN3-213ENST00000565047 UNC93B1Q9H1C4 597 aa17.89■□□□□ 0.45
CLN3-213ENST00000565047 PORCNQ9H237 461 aa17.89■□□□□ 0.45
CLN3-213ENST00000565047 M0R2C6 588 aa17.88■□□□□ 0.45
CLN3-213ENST00000565047 GLRX3O76003 335 aaKnown RBP17.88■□□□□ 0.45
CLN3-213ENST00000565047 INHAP05111 366 aa17.88■□□□□ 0.45
CLN3-213ENST00000565047 ZFYP08048 801 aaPredicted RBP17.88■□□□□ 0.45
CLN3-213ENST00000565047 UBXN2AP68543 259 aa17.88■□□□□ 0.45
CLN3-213ENST00000565047 FEZ1Q99689 392 aa17.88■□□□□ 0.45
CLN3-213ENST00000565047 EPB41L4AQ9HCS5 686 aaPredicted RBP17.88■□□□□ 0.45
CLN3-213ENST00000565047 STAP2Q9UGK3 403 aa17.88■□□□□ 0.45
CLN3-213ENST00000565047 SPDYE16A6NNV3 312 aaPredicted RBP17.87■□□□□ 0.45
CLN3-213ENST00000565047 MX1P20591 662 aa17.87■□□□□ 0.45
CLN3-213ENST00000565047 CLEC10AQ8IUN9 316 aa17.87■□□□□ 0.45
CLN3-213ENST00000565047 CCDC17Q96LX7 622 aa17.87■□□□□ 0.45
CLN3-213ENST00000565047 RNF208Q9H0X6 261 aa17.87■□□□□ 0.45
CLN3-213ENST00000565047 RPAP3Q9H6T3 665 aaPredicted RBP17.87■□□□□ 0.45
CLN3-213ENST00000565047 PAK6Q9NQU5 681 aaPredicted RBP17.87■□□□□ 0.45
CLN3-213ENST00000565047 BTBD7Q9P203 1132 aa17.87■□□□□ 0.45
CLN3-213ENST00000565047 TMX2Q9Y320 296 aa17.87■□□□□ 0.45
CLN3-213ENST00000565047 RABGAP1Q9Y3P9 1069 aa17.87■□□□□ 0.45
CLN3-213ENST00000565047 RLFQ13129 1914 aa17.87■□□□□ 0.45
CLN3-213ENST00000565047 MPHOSPH10O00566 681 aaKnown RBP17.86■□□□□ 0.45
CLN3-213ENST00000565047 ERC2O15083 957 aa17.86■□□□□ 0.45
CLN3-213ENST00000565047 GPAA1O43292 621 aa17.86■□□□□ 0.45
CLN3-213ENST00000565047 MORN1Q5T089 497 aa17.86■□□□□ 0.45
CLN3-213ENST00000565047 GCC1Q96CN9 775 aa17.86■□□□□ 0.45
CLN3-213ENST00000565047 SEC62Q99442 399 aaKnown RBP17.86■□□□□ 0.45
CLN3-213ENST00000565047 ARPP21Q9UBL0 812 aaPredicted RBP17.86■□□□□ 0.45
CLN3-213ENST00000565047 ROBO3Q96MS0 1386 aa17.86■□□□□ 0.45
CLN3-213ENST00000565047 SGPL1O95470 568 aa17.85■□□□□ 0.45
CLN3-213ENST00000565047 XRCC5P13010 732 aaKnown RBP17.85■□□□□ 0.45
CLN3-213ENST00000565047 MAPK4P31152 587 aa17.85■□□□□ 0.45
CLN3-213ENST00000565047 TRIM32Q13049 653 aa17.85■□□□□ 0.45
CLN3-213ENST00000565047 AAMPQ13685 434 aa17.85■□□□□ 0.45
CLN3-213ENST00000565047 ZMYM1Q5SVZ6 1142 aa17.85■□□□□ 0.45
CLN3-213ENST00000565047 ANKRD45Q5TZF3 282 aa17.85■□□□□ 0.45
CLN3-213ENST00000565047 GPR142Q7Z601 462 aa17.85■□□□□ 0.45
CLN3-213ENST00000565047 NKX2-3Q8TAU0 364 aa17.85■□□□□ 0.45
CLN3-213ENST00000565047 U2AF1L4Q8WU68 220 aaKnown RBP17.85■□□□□ 0.45
CLN3-213ENST00000565047 TRIB2Q92519 343 aa17.85■□□□□ 0.45
CLN3-213ENST00000565047 GREB1LQ9C091 1923 aaPredicted RBP17.85■□□□□ 0.45
CLN3-213ENST00000565047 CRISPLD2Q9H0B8 497 aa17.85■□□□□ 0.45
CLN3-213ENST00000565047 BIN2Q9UBW5 565 aaPredicted RBP17.85■□□□□ 0.45
CLN3-213ENST00000565047 PATL2C9JE40 543 aaKnown RBP17.84■□□□□ 0.45
CLN3-213ENST00000565047 FOXP2O15409 715 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms