RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CILPO75339 1184 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 BPNT1O95861 308 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 EOMESO95936 686 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 CST3P01034 146 aaPredicted RBP7.06□□□□□ -1.28
VPS35-205ENST00000563984 PF4P02776 101 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 PGRP06401 933 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 FUT4P22083 530 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 PRKCQQ04759 706 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 MRPL41Q8IXM3 137 aaKnown RBP7.06□□□□□ -1.28
VPS35-205ENST00000563984 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS35-205ENST00000563984 LMCD1Q9NZU5 365 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 ADAMTS6Q9UKP5 1117 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 PLAGL2Q9UPG8 496 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 MAPK8IP1Q9UQF2 711 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 RBAK-RBAKDNI3L0D1 243 aa7.05□□□□□ -1.28
VPS35-205ENST00000563984 SLITRK5O94991 958 aa7.05□□□□□ -1.28
VPS35-205ENST00000563984 ZNF16P17020 682 aaPredicted RBP7.05□□□□□ -1.28
VPS35-205ENST00000563984 RAP1GAPP47736 663 aa7.05□□□□□ -1.28
VPS35-205ENST00000563984 AOC3Q16853 763 aa7.05□□□□□ -1.28
VPS35-205ENST00000563984 SLC6A19Q695T7 634 aa7.05□□□□□ -1.28
VPS35-205ENST00000563984 ZNF746Q6NUN9 644 aaPredicted RBP7.05□□□□□ -1.28
VPS35-205ENST00000563984 BNC2Q6ZN30 1099 aaPredicted RBP7.05□□□□□ -1.28
VPS35-205ENST00000563984 ZSCAN18Q8TBC5 510 aaPredicted RBP7.05□□□□□ -1.28
VPS35-205ENST00000563984 CCDC136Q96JN2 1154 aa7.05□□□□□ -1.28
VPS35-205ENST00000563984 TNKS2Q9H2K2 1166 aa7.05□□□□□ -1.28
VPS35-205ENST00000563984 PRDM5Q9NQX1 630 aaPredicted RBP7.05□□□□□ -1.28
VPS35-205ENST00000563984 RAPGEFL1Q9UHV5 662 aa7.05□□□□□ -1.28
VPS35-205ENST00000563984 GNAT3A8MTJ3 354 aa7.04□□□□□ -1.28
VPS35-205ENST00000563984 F13A1P00488 732 aa7.04□□□□□ -1.28
VPS35-205ENST00000563984 PRAMEF13Q5VWM6 474 aa7.04□□□□□ -1.28
VPS35-205ENST00000563984 ERMP1Q7Z2K6 904 aa7.04□□□□□ -1.28
VPS35-205ENST00000563984 MCATQ8IVS2 390 aaKnown RBP7.04□□□□□ -1.28
VPS35-205ENST00000563984 LRRC56Q8IYG6 542 aaPredicted RBP7.04□□□□□ -1.28
VPS35-205ENST00000563984 TMEM87BQ96K49 555 aa7.04□□□□□ -1.28
VPS35-205ENST00000563984 COX4I2Q96KJ9 171 aa7.04□□□□□ -1.28
VPS35-205ENST00000563984 HRASLS5Q96KN8 279 aa7.04□□□□□ -1.28
VPS35-205ENST00000563984 MIPEPQ99797 713 aa7.04□□□□□ -1.28
VPS35-205ENST00000563984 PRDM7Q9NQW5 492 aa7.04□□□□□ -1.28
VPS35-205ENST00000563984 TJP2Q9UDY2 1190 aa7.04□□□□□ -1.28
VPS35-205ENST00000563984 LRRC10BA6NIK2 292 aa7.03□□□□□ -1.28
VPS35-205ENST00000563984 MINDY4BA8MYZ0 360 aa7.03□□□□□ -1.28
VPS35-205ENST00000563984 F6X3S4 739 aa7.03□□□□□ -1.28
VPS35-205ENST00000563984 ZSCAN22P10073 491 aaPredicted RBP7.03□□□□□ -1.28
VPS35-205ENST00000563984 CYP7A1P22680 504 aa7.03□□□□□ -1.28
VPS35-205ENST00000563984 LETMD1Q6P1Q0 360 aa7.03□□□□□ -1.28
VPS35-205ENST00000563984 C22orf34Q6ZV56 151 aa7.03□□□□□ -1.28
VPS35-205ENST00000563984 LRRN4CLQ8ND94 238 aa7.03□□□□□ -1.28
VPS35-205ENST00000563984 KBTBD4Q9NVX7 518 aa7.03□□□□□ -1.28
VPS35-205ENST00000563984 TPX2Q9ULW0 747 aaKnown RBP7.03□□□□□ -1.28
VPS35-205ENST00000563984 MPP2Q14168 576 aa7.02□□□□□ -1.29
VPS35-205ENST00000563984 SNAP47Q5SQN1 464 aa7.02□□□□□ -1.29
VPS35-205ENST00000563984 SFRP5Q5T4F7 317 aa7.02□□□□□ -1.29
VPS35-205ENST00000563984 HS2ST1Q7LGA3 356 aa7.02□□□□□ -1.29
VPS35-205ENST00000563984 SPACA3Q8IXA5 215 aa7.02□□□□□ -1.29
VPS35-205ENST00000563984 GOLM1Q8NBJ4 401 aa7.02□□□□□ -1.29
VPS35-205ENST00000563984 ASB11Q8WXH4 323 aa7.02□□□□□ -1.29
VPS35-205ENST00000563984 ACSF2Q96CM8 615 aaPredicted RBP7.02□□□□□ -1.29
VPS35-205ENST00000563984 PSMD1Q99460 953 aa7.02□□□□□ -1.29
VPS35-205ENST00000563984 KCNQ5Q9NR82 932 aa7.02□□□□□ -1.29
VPS35-205ENST00000563984 ROBO2Q9HCK4 1378 aa7.02□□□□□ -1.29
VPS35-205ENST00000563984 PRR36Q9H6K5 1346 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 TSPAN15O95858 294 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 PLCG1P19174 1290 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 GARTP22102 1010 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 CLCN7P51798 805 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 FAM160A1Q05DH4 1040 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 NKPD1Q17RQ9 610 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 TMEM201Q5SNT2 666 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 FAM196AQ6ZSG2 479 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 TMEM87AQ8NBN3 555 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 RIN3Q8TB24 985 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 PI4K2BQ8TCG2 481 aa7.01□□□□□ -1.29
VPS35-205ENST00000563984 RBM47A0AV96 593 aaKnown RBP7□□□□□ -1.29
VPS35-205ENST00000563984 NCLP19338 710 aaKnown RBP7□□□□□ -1.29
VPS35-205ENST00000563984 EIF4A3P38919 411 aaKnown RBP7□□□□□ -1.29
VPS35-205ENST00000563984 YARSP54577 528 aaKnown RBP7□□□□□ -1.29
VPS35-205ENST00000563984 FBXL19Q6PCT2 694 aa7□□□□□ -1.29
VPS35-205ENST00000563984 XAGE3Q8WTP9 111 aa7□□□□□ -1.29
VPS35-205ENST00000563984 COPRSQ9NQ92 184 aa7□□□□□ -1.29
VPS35-205ENST00000563984 GGT7Q9UJ14 662 aa7□□□□□ -1.29
VPS35-205ENST00000563984 SUPT16HQ9Y5B9 1047 aaKnown RBP7□□□□□ -1.29
VPS35-205ENST00000563984 CORINQ9Y5Q5 1042 aa7□□□□□ -1.29
VPS35-205ENST00000563984 ZNF503-AS2A6NEH8 195 aa6.99□□□□□ -1.29
VPS35-205ENST00000563984 ETV3P41162 512 aa6.99□□□□□ -1.29
VPS35-205ENST00000563984 KIR3DL1P43629 444 aa6.99□□□□□ -1.29
VPS35-205ENST00000563984 ANGEL2Q5VTE6 544 aaKnown RBP6.99□□□□□ -1.29
VPS35-205ENST00000563984 REC114Q7Z4M0 266 aa6.99□□□□□ -1.29
VPS35-205ENST00000563984 MFSD4AQ8N468 514 aa6.99□□□□□ -1.29
VPS35-205ENST00000563984 DPH2Q9BQC3 489 aaPredicted RBP6.99□□□□□ -1.29
VPS35-205ENST00000563984 LRRC3Q9BY71 257 aa6.99□□□□□ -1.29
VPS35-205ENST00000563984 FAM155AB1AL88 458 aaPredicted RBP6.98□□□□□ -1.29
VPS35-205ENST00000563984 GREM1O60565 184 aa6.98□□□□□ -1.29
VPS35-205ENST00000563984 MLANAQ16655 118 aa6.98□□□□□ -1.29
VPS35-205ENST00000563984 CWF19L2Q2TBE0 894 aaKnown RBP6.98□□□□□ -1.29
VPS35-205ENST00000563984 CDH24Q86UP0 819 aa6.98□□□□□ -1.29
VPS35-205ENST00000563984 FAM13CQ8NE31 585 aa6.98□□□□□ -1.29
VPS35-205ENST00000563984 CYB5D2Q8WUJ1 264 aa6.98□□□□□ -1.29
VPS35-205ENST00000563984 REV1Q9UBZ9 1251 aa6.98□□□□□ -1.29
VPS35-205ENST00000563984 CNTNAP4Q9C0A0 1308 aa6.98□□□□□ -1.29
VPS35-205ENST00000563984 A0A0U1RQG5 324 aaPredicted RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms