RNA–Protein interactions for RNA: ENST00000563917.2

CLN6-203, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-203ENST00000563917 ZSCAN25Q6NSZ9 544 aa11.54□□□□□ -0.56
CLN6-203ENST00000563917 ANKLE1Q8NAG6 615 aa11.54□□□□□ -0.56
CLN6-203ENST00000563917 C12orf42Q96LP6 360 aa11.54□□□□□ -0.56
CLN6-203ENST00000563917 RIOK1Q9BRS2 568 aaKnown RBP11.54□□□□□ -0.56
CLN6-203ENST00000563917 PAK6Q9NQU5 681 aaPredicted RBP11.54□□□□□ -0.56
CLN6-203ENST00000563917 EMILIN3Q9NT22 766 aa11.54□□□□□ -0.56
CLN6-203ENST00000563917 ZBTB40Q9NUA8 1239 aa11.54□□□□□ -0.56
CLN6-203ENST00000563917 PAG1Q9NWQ8 432 aa11.54□□□□□ -0.56
CLN6-203ENST00000563917 RABGAP1Q9Y3P9 1069 aa11.54□□□□□ -0.56
CLN6-203ENST00000563917 CDK5RAP2Q96SN8 1893 aa11.54□□□□□ -0.56
CLN6-203ENST00000563917 XRCC5P13010 732 aaKnown RBP11.53□□□□□ -0.56
CLN6-203ENST00000563917 PLCD1P51178 756 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 JAG1P78504 1218 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 SHROOM1Q2M3G4 852 aaPredicted RBP11.53□□□□□ -0.56
CLN6-203ENST00000563917 CHRDL2Q6WN34 429 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 PLEKHH3Q7Z736 793 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 GPATCH3Q96I76 525 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 LRRCC1Q9C099 1032 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 NBPF3Q9H094 633 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 KIAA1683Q9H0B3 1180 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 BOLA2Q9H3K6 86 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 SH2D4AQ9H788 454 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 RBPJLQ9UBG7 517 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 SWAP70Q9UH65 585 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 GJD2Q9UKL4 321 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 SIPA1L1O43166 1804 aa11.53□□□□□ -0.56
CLN6-203ENST00000563917 CENPFP49454 3210 aa11.52□□□□□ -0.57
CLN6-203ENST00000563917 ATP5JP18859 108 aa11.52□□□□□ -0.57
CLN6-203ENST00000563917 SHMT1P34896 483 aa11.52□□□□□ -0.57
CLN6-203ENST00000563917 GPR142Q7Z601 462 aa11.52□□□□□ -0.57
CLN6-203ENST00000563917 UBE2Q1Q7Z7E8 422 aa11.52□□□□□ -0.57
CLN6-203ENST00000563917 PAWRQ96IZ0 340 aaKnown RBP11.52□□□□□ -0.57
CLN6-203ENST00000563917 CRISPLD2Q9H0B8 497 aa11.52□□□□□ -0.57
CLN6-203ENST00000563917 ARHGEF10LQ9HCE6 1279 aa11.52□□□□□ -0.57
CLN6-203ENST00000563917 TXNRD2Q9NNW7 524 aa11.52□□□□□ -0.57
CLN6-203ENST00000563917 ATP8A2Q9NTI2 1148 aa11.52□□□□□ -0.57
CLN6-203ENST00000563917 PRKAR2AP13861 404 aaKnown RBP11.51□□□□□ -0.57
CLN6-203ENST00000563917 VCAM1P19320 739 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 SEPT2Q15019 361 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 MFSD14CQ5VZR4 134 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 CATSPERGQ6ZRH7 1159 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 TMEM179Q6ZVK1 233 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 SDR42E1Q8WUS8 393 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 TRIB2Q92519 343 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 EDC3Q96F86 508 aaKnown RBP11.51□□□□□ -0.57
CLN6-203ENST00000563917 APBA2Q99767 749 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 TANGO6Q9C0B7 1094 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 RPAP3Q9H6T3 665 aaPredicted RBP11.51□□□□□ -0.57
CLN6-203ENST00000563917 ARMT1Q9H993 441 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 DCP1AQ9NPI6 582 aaPredicted RBP11.51□□□□□ -0.57
CLN6-203ENST00000563917 HOXC10Q9NYD6 342 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 DOCK3Q8IZD9 2030 aa11.51□□□□□ -0.57
CLN6-203ENST00000563917 MBD4O95243 580 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 ADD2P35612 726 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 GABPAQ06546 454 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 MAP2K5Q13163 448 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 COG2Q14746 738 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 LRRFIP1Q32MZ4 808 aaKnown RBP11.5□□□□□ -0.57
CLN6-203ENST00000563917 Q3C1V9 767 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 SIRT2Q8IXJ6 389 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 LCORLQ8N3X6 602 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 ACER1Q8TDN7 264 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 CCDC17Q96LX7 622 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 HAUS7Q99871 368 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 PORCNQ9H237 461 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 C11orf49Q9H6J7 331 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 SLC5A4Q9NY91 659 aa11.5□□□□□ -0.57
CLN6-203ENST00000563917 NAV1Q8NEY1 1877 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 TCRBV5S4A2TA0A5A2 114 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 SLC15A5A6NIM6 579 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 PEX10O60683 326 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 FXR1P51114 621 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLN6-203ENST00000563917 ATP2B2Q01814 1243 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 TRIM32Q13049 653 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 UBE3CQ15386 1083 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 LBX2Q6XYB7 198 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 DPP9Q86TI2 863 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 LPAR1Q92633 364 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 ZBTB47Q9UFB7 747 aaPredicted RBP11.49□□□□□ -0.57
CLN6-203ENST00000563917 SLC4A4Q9Y6R1 1079 aa11.49□□□□□ -0.57
CLN6-203ENST00000563917 CEP290O15078 2479 aa11.48□□□□□ -0.57
CLN6-203ENST00000563917 ICA1Q05084 483 aa11.48□□□□□ -0.57
CLN6-203ENST00000563917 CACNB2Q08289 660 aaPredicted RBP11.48□□□□□ -0.57
CLN6-203ENST00000563917 MORN1Q5T089 497 aa11.48□□□□□ -0.57
CLN6-203ENST00000563917 MAP3K21Q5TCX8 1036 aa11.48□□□□□ -0.57
CLN6-203ENST00000563917 C7orf61Q8IZ16 206 aa11.48□□□□□ -0.57
CLN6-203ENST00000563917 MB21D1Q8N884 522 aa11.48□□□□□ -0.57
CLN6-203ENST00000563917 ECHDC1Q9NTX5 307 aa11.48□□□□□ -0.57
CLN6-203ENST00000563917 RBM27Q9P2N5 1060 aaKnown RBP11.48□□□□□ -0.57
CLN6-203ENST00000563917 OGDHLQ9ULD0 1010 aa11.48□□□□□ -0.57
CLN6-203ENST00000563917 A0A1W2PPC1 479 aa11.47□□□□□ -0.57
CLN6-203ENST00000563917 SPDYE16A6NNV3 312 aaPredicted RBP11.47□□□□□ -0.57
CLN6-203ENST00000563917 USP17L12C9JPN9 530 aa11.47□□□□□ -0.57
CLN6-203ENST00000563917 USP17L21D6R901 530 aa11.47□□□□□ -0.57
CLN6-203ENST00000563917 STRNO43815 780 aa11.47□□□□□ -0.57
CLN6-203ENST00000563917 MSCO60682 206 aa11.47□□□□□ -0.57
CLN6-203ENST00000563917 FLOT1O75955 427 aa11.47□□□□□ -0.57
CLN6-203ENST00000563917 CYP2D6P10635 497 aa11.47□□□□□ -0.57
CLN6-203ENST00000563917 PTPREP23469 700 aa11.47□□□□□ -0.57
CLN6-203ENST00000563917 CNGA1P29973 690 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms