RNA–Protein interactions for RNA: ENST00000563092.1

CKLF-208, Transcript of chemokine like factor, human

TSL 3

Gene CKLF, Length 365 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKLF-208	ENST00000563092	MVP	Q14764	893 aa	Known RBP	10.3	□□□□□ -0.76
CKLF-208	ENST00000563092	ALDH1L2	Q3SY69	923 aa		10.3	□□□□□ -0.76
CKLF-208	ENST00000563092	PLEKHH3	Q7Z736	793 aa		10.3	□□□□□ -0.76
CKLF-208	ENST00000563092	GTF3C2	Q8WUA4	911 aa	Predicted RBP	10.3	□□□□□ -0.76
CKLF-208	ENST00000563092	DHX36	Q9H2U1	1008 aa	Known RBP	10.3	□□□□□ -0.76
CKLF-208	ENST00000563092	PRDM6	Q9NQX0	595 aa		10.3	□□□□□ -0.76
CKLF-208	ENST00000563092	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.3	□□□□□ -0.76
CKLF-208	ENST00000563092	TTC28	Q96AY4	2481 aa		10.3	□□□□□ -0.76
CKLF-208	ENST00000563092	LTBP2	Q14767	1821 aa		10.3	□□□□□ -0.76
CKLF-208	ENST00000563092	FRMPD3	Q5JV73	1810 aa		10.3	□□□□□ -0.76
CKLF-208	ENST00000563092	USP17L10	C9JJH3	530 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	CNMD	O75829	334 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	ARID4A	P29374	1257 aa	Predicted RBP	10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	EMP3	P54852	163 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	PPP4C	P60510	307 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	MAP2K5	Q13163	448 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	PDE3A	Q14432	1141 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	LBX2	Q6XYB7	198 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	FOXP4	Q8IVH2	680 aa	Predicted RBP	10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	SPNS2	Q8IVW8	549 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	SPATA5	Q8NB90	893 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	LPAR1	Q92633	364 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	C12orf42	Q96LP6	360 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	CDX2	Q99626	313 aa	Predicted RBP	10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	EMILIN3	Q9NT22	766 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	TMOD4	Q9NZQ9	345 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	FLRT1	Q9NZU1	646 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	AKAP2	Q9Y2D5	859 aa		10.29	□□□□□ -0.76
CKLF-208	ENST00000563092	DNM1L	O00429	736 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	MSC	O60682	206 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	TFCP2	Q12800	502 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	MMRN1	Q13201	1228 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	SNX17	Q15036	470 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	SHROOM1	Q2M3G4	852 aa	Predicted RBP	10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	ZNF697	Q5TEC3	545 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	PI16	Q6UXB8	463 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	TBC1D9	Q6ZT07	1266 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	TEX11	Q8IYF3	940 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	SENP6	Q9GZR1	1112 aa	Predicted RBP	10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	SEMA6B	Q9H3T3	888 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	DDX20	Q9UHI6	824 aa	Known RBP	10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	RABGAP1	Q9Y3P9	1069 aa		10.28	□□□□□ -0.76
CKLF-208	ENST00000563092	SLC15A5	A6NIM6	579 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092		E9PSI1	815 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	IGSF3	O75054	1194 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	PTPRE	P23469	700 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	SMAD3	P84022	425 aa	Known RBP	10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	GRB14	Q14449	540 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	SHH	Q15465	462 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	TRPV1	Q8NER1	839 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	MAFA	Q8NHW3	353 aa	Predicted RBP	10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	EDC3	Q96F86	508 aa	Known RBP	10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	FAM161B	Q96MY7	647 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	LBHD1	Q9BQE6	289 aa	Predicted RBP	10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	TTYH1	Q9H313	450 aa	Predicted RBP	10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	ZBTB21	Q9ULJ3	1066 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	HDAC5	Q9UQL6	1122 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	FLT1	P17948	1338 aa		10.27	□□□□□ -0.77
CKLF-208	ENST00000563092	CYBA	P13498	195 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	MCAM	P43121	646 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	RTP1	P59025	263 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	SLFN5	Q08AF3	891 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	C9orf50	Q5SZB4	431 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	C1orf53	Q5VUE5	145 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	MFSD14C	Q5VZR4	134 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	USP17L2	Q6R6M4	530 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	TRMT2A	Q8IZ69	625 aa	Known RBP	10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	MEIS3	Q99687	375 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	FOCAD	Q5VW36	1801 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	ZNF236	Q9UL36	1845 aa		10.26	□□□□□ -0.77
CKLF-208	ENST00000563092	RLF	Q13129	1914 aa		10.25	□□□□□ -0.77
CKLF-208	ENST00000563092	TMEM265	A0A087WTH1	108 aa		10.25	□□□□□ -0.77
CKLF-208	ENST00000563092	GLRX3	O76003	335 aa	Known RBP	10.25	□□□□□ -0.77
CKLF-208	ENST00000563092	TATDN1	Q6P1N9	297 aa		10.25	□□□□□ -0.77
CKLF-208	ENST00000563092	CATSPERG	Q6ZRH7	1159 aa		10.25	□□□□□ -0.77
CKLF-208	ENST00000563092	ADGRA1	Q86SQ6	560 aa		10.25	□□□□□ -0.77
CKLF-208	ENST00000563092	NPLOC4	Q8TAT6	608 aa		10.25	□□□□□ -0.77
CKLF-208	ENST00000563092	PAGR1	Q9BTK6	254 aa		10.25	□□□□□ -0.77
CKLF-208	ENST00000563092	KIAA1683	Q9H0B3	1180 aa		10.25	□□□□□ -0.77
CKLF-208	ENST00000563092	CDK5RAP2	Q96SN8	1893 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	USP17L15	C9J2P7	530 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	USP17L13	C9JLJ4	530 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	USP17L11	C9JVI0	530 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	USP17L18	D6R9N7	530 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	USP17L22	D6RA61	530 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	USP17L17	D6RBQ6	530 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	USP17L19	D6RCP7	530 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	USP17L20	D6RJB6	530 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	GDF11	O95390	407 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	BAG3	O95817	575 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	CCNA1	P78396	465 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	USP17L24	Q0WX57	530 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	OLFML2B	Q68BL8	750 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	SLC39A5	Q6ZMH5	540 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	TGFBRAP1	Q8WUH2	860 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	AATF	Q9NY61	560 aa	Known RBP eCLIP	10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	RAI14	Q9P0K7	980 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	BTBD7	Q9P203	1132 aa		10.24	□□□□□ -0.77
CKLF-208	ENST00000563092	PALD1	Q9ULE6	856 aa		10.24	□□□□□ -0.77

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