RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 PRRT3Q5FWE3 981 aa8.29□□□□□ -1.08
LRRC28-220ENST00000561253 LLGL2Q6P1M3 1020 aa8.29□□□□□ -1.08
LRRC28-220ENST00000561253 AGMOQ6ZNB7 445 aa8.29□□□□□ -1.08
LRRC28-220ENST00000561253 FBXO11Q86XK2 927 aa8.29□□□□□ -1.08
LRRC28-220ENST00000561253 PHC3Q8NDX5 983 aa8.29□□□□□ -1.08
LRRC28-220ENST00000561253 STK35Q8TDR2 534 aa8.29□□□□□ -1.08
LRRC28-220ENST00000561253 PUS7Q96PZ0 661 aaKnown RBP8.29□□□□□ -1.08
LRRC28-220ENST00000561253 USP26Q9BXU7 913 aa8.29□□□□□ -1.08
LRRC28-220ENST00000561253 TLR6Q9Y2C9 796 aa8.29□□□□□ -1.08
LRRC28-220ENST00000561253 AHDC1Q5TGY3 1603 aaPredicted RBP8.29□□□□□ -1.08
LRRC28-220ENST00000561253 CNTNAP5Q8WYK1 1306 aa8.29□□□□□ -1.08
LRRC28-220ENST00000561253 TOPAZ1Q8N9V7 1692 aa8.28□□□□□ -1.08
LRRC28-220ENST00000561253 ROBO1Q9Y6N7 1651 aa8.28□□□□□ -1.08
LRRC28-220ENST00000561253 GSTP1P09211 210 aaKnown RBP8.28□□□□□ -1.08
LRRC28-220ENST00000561253 MAOBP27338 520 aa8.28□□□□□ -1.08
LRRC28-220ENST00000561253 ZC3H6P61129 1189 aaKnown RBP8.28□□□□□ -1.08
LRRC28-220ENST00000561253 FOXD4L6Q3SYB3 417 aaPredicted RBP8.28□□□□□ -1.08
LRRC28-220ENST00000561253 FOXD4L3Q6VB84 417 aaPredicted RBP8.28□□□□□ -1.08
LRRC28-220ENST00000561253 KCNB2Q92953 911 aa8.28□□□□□ -1.08
LRRC28-220ENST00000561253 ZC3H12CQ9C0D7 883 aaKnown RBP8.28□□□□□ -1.08
LRRC28-220ENST00000561253 EVC2Q86UK5 1308 aa8.28□□□□□ -1.08
LRRC28-220ENST00000561253 PXDNQ92626 1479 aa8.27□□□□□ -1.09
LRRC28-220ENST00000561253 CD163L1Q9NR16 1453 aa8.27□□□□□ -1.09
LRRC28-220ENST00000561253 POLR3AO14802 1390 aaPredicted RBP8.27□□□□□ -1.09
LRRC28-220ENST00000561253 FAM229AH3BQW9 127 aa8.27□□□□□ -1.09
LRRC28-220ENST00000561253 DDX3YO15523 660 aaKnown RBP8.27□□□□□ -1.09
LRRC28-220ENST00000561253 EIF4A3P38919 411 aaKnown RBP8.27□□□□□ -1.09
LRRC28-220ENST00000561253 HNRNPUQ00839 825 aaKnown RBP eCLIP8.27□□□□□ -1.09
LRRC28-220ENST00000561253 DIEXFQ68CQ4 756 aaKnown RBP8.27□□□□□ -1.09
LRRC28-220ENST00000561253 GRIN3AQ8TCU5 1115 aa8.27□□□□□ -1.09
LRRC28-220ENST00000561253 SCARF2Q96GP6 870 aaPredicted RBP8.27□□□□□ -1.09
LRRC28-220ENST00000561253 ACBD3Q9H3P7 528 aa8.27□□□□□ -1.09
LRRC28-220ENST00000561253 COL16A1Q07092 1604 aaPredicted RBP8.26□□□□□ -1.09
LRRC28-220ENST00000561253 NHSL1Q5SYE7 1610 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 DLL1O00548 723 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 TM4SF5O14894 197 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 ADAM11O75078 769 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 PF4P02776 101 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 TFE3P19532 575 aaPredicted RBP8.26□□□□□ -1.09
LRRC28-220ENST00000561253 LMNB2Q03252 620 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 FAM160A1Q05DH4 1040 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 CAMK2GQ13555 558 aaPredicted RBP8.26□□□□□ -1.09
LRRC28-220ENST00000561253 PDE3AQ14432 1141 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 DUOXA2Q1HG44 320 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 SNAP47Q5SQN1 464 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 HP1BP3Q5SSJ5 553 aaPredicted RBP8.26□□□□□ -1.09
LRRC28-220ENST00000561253 RASIP1Q5U651 963 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 MAP1SQ66K74 1059 aaPredicted RBP8.26□□□□□ -1.09
LRRC28-220ENST00000561253 PDZD3Q86UT5 571 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 DDX17Q92841 729 aaKnown RBP8.26□□□□□ -1.09
LRRC28-220ENST00000561253 RHOVQ96L33 236 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 SPON2Q9BUD6 331 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 NRSN2Q9GZP1 204 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 MIR1-1HGQ9H1L0 117 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 CPSF1Q10570 1443 aaKnown RBP8.26□□□□□ -1.09
LRRC28-220ENST00000561253 SSH2Q76I76 1423 aa8.26□□□□□ -1.09
LRRC28-220ENST00000561253 LOC100289279A0A1B0GTE1 492 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 FAM181BA6NEQ2 426 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 ELNP15502 786 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 HSPA1LP34931 641 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 ZNF252P-AS1Q0IIN9 211 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 KIAA0825Q8IV33 1275 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 TRIM42Q8IWZ5 723 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 ACSBG1Q96GR2 724 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 KCNK4Q9NYG8 393 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 INPP5FQ9Y2H2 1132 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 PCDHB5Q9Y5E4 795 aa8.25□□□□□ -1.09
LRRC28-220ENST00000561253 RGPD8O14715 1765 aaPredicted RBP8.25□□□□□ -1.09
LRRC28-220ENST00000561253 PPIP5K1Q6PFW1 1433 aa8.24□□□□□ -1.09
LRRC28-220ENST00000561253 ECEL1O95672 775 aa8.24□□□□□ -1.09
LRRC28-220ENST00000561253 ZEB1P37275 1124 aaPredicted RBP8.24□□□□□ -1.09
LRRC28-220ENST00000561253 GNL2Q13823 731 aaKnown RBP8.24□□□□□ -1.09
LRRC28-220ENST00000561253 IGF2-ASQ6U949 168 aa8.24□□□□□ -1.09
LRRC28-220ENST00000561253 GOLM1Q8NBJ4 401 aa8.24□□□□□ -1.09
LRRC28-220ENST00000561253 UBASH3BQ8TF42 649 aa8.24□□□□□ -1.09
LRRC28-220ENST00000561253 ZNF296Q8WUU4 475 aaPredicted RBP8.24□□□□□ -1.09
LRRC28-220ENST00000561253 JARID2Q92833 1246 aaPredicted RBP8.24□□□□□ -1.09
LRRC28-220ENST00000561253 C8orf37Q96NL8 207 aa8.24□□□□□ -1.09
LRRC28-220ENST00000561253 CAPN10Q9HC96 672 aa8.24□□□□□ -1.09
LRRC28-220ENST00000561253 KRT82Q9NSB4 513 aa8.24□□□□□ -1.09
LRRC28-220ENST00000561253 ADAMTS1Q9UHI8 967 aa8.24□□□□□ -1.09
LRRC28-220ENST00000561253 SUPT16HQ9Y5B9 1047 aaKnown RBP8.24□□□□□ -1.09
LRRC28-220ENST00000561253 KIF1AQ12756 1690 aa8.24□□□□□ -1.09
LRRC28-220ENST00000561253 TRIM37O94972 964 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 SPATA31C1P0DKV0 1188 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 TMF1P82094 1093 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 SEPT6Q14141 434 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 NAALADL2Q58DX5 795 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 SCARA3Q6AZY7 606 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 ACAD11Q709F0 780 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 PMFBP1Q8TBY8 1022 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 MRPL18Q9H0U6 180 aaKnown RBP8.23□□□□□ -1.09
LRRC28-220ENST00000561253 SLC12A5Q9H2X9 1139 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 CCDC86Q9H6F5 360 aaKnown RBP8.23□□□□□ -1.09
LRRC28-220ENST00000561253 ACEP12821 1306 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 NPHP3Q7Z494 1330 aa8.23□□□□□ -1.09
LRRC28-220ENST00000561253 TRPM3Q9HCF6 1732 aaPredicted RBP8.23□□□□□ -1.09
LRRC28-220ENST00000561253 SBNO1A3KN83 1393 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 NINLQ9Y2I6 1382 aa8.22□□□□□ -1.09
LRRC28-220ENST00000561253 USP6P35125 1406 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms