RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 CCDC17Q96LX7 622 aa13.2□□□□□ -0.3
SNX1-212ENST00000560861 TEPSINQ96N21 525 aa13.2□□□□□ -0.3
SNX1-212ENST00000560861 MAP3K14Q99558 947 aa13.2□□□□□ -0.3
SNX1-212ENST00000560861 NAP1L2Q9ULW6 460 aaPredicted RBP13.2□□□□□ -0.3
SNX1-212ENST00000560861 POLR2AP24928 1970 aaKnown RBP13.2□□□□□ -0.3
SNX1-212ENST00000560861 STK36Q9NRP7 1315 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 ZC3H4Q9UPT8 1303 aaKnown RBP13.19□□□□□ -0.3
SNX1-212ENST00000560861 FAM196BA6NMK8 535 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 STX6O43752 255 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 MYO1BO43795 1136 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 DHX16O60231 1041 aaKnown RBP13.19□□□□□ -0.3
SNX1-212ENST00000560861 TBC1D12O60347 775 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 IFNAR1P17181 557 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 GUCY1A2P33402 732 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 PPP2R5BQ15173 497 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 RTN1Q16799 776 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 NBPF11Q86T75 865 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 CEP95Q96GE4 821 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 TMEM47Q9BQJ4 181 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 VEZTQ9HBM0 779 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 MTMR4Q9NYA4 1195 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 HERC5Q9UII4 1024 aaKnown RBP13.19□□□□□ -0.3
SNX1-212ENST00000560861 MYH15Q9Y2K3 1946 aa13.19□□□□□ -0.3
SNX1-212ENST00000560861 ATAD5Q96QE3 1844 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 WDR33Q9C0J8 1336 aaKnown RBP13.18□□□□□ -0.3
SNX1-212ENST00000560861 TCHHQ07283 1943 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 H7C1D1 291 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 DDNO94850 711 aaPredicted RBP13.18□□□□□ -0.3
SNX1-212ENST00000560861 CALM1P0DP23 149 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 CALM2P0DP24 149 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 CALM3P0DP25 149 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 PDIA4P13667 645 aaKnown RBP13.18□□□□□ -0.3
SNX1-212ENST00000560861 PDCP20941 246 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 EPS15P42566 896 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 HIRAP54198 1017 aaPredicted RBP13.18□□□□□ -0.3
SNX1-212ENST00000560861 JAG1P78504 1218 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 GRM4Q14833 912 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 SHROOM1Q2M3G4 852 aaPredicted RBP13.18□□□□□ -0.3
SNX1-212ENST00000560861 SYNE3Q6ZMZ3 975 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 CATIPQ7Z7H3 387 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 ZSCAN29Q8IWY8 852 aaPredicted RBP13.18□□□□□ -0.3
SNX1-212ENST00000560861 CCDC144CPQ8IYA2 1237 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 RGS22Q8NE09 1264 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 DDX11Q96FC9 970 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 L3MBTL3Q96JM7 780 aaPredicted RBP13.18□□□□□ -0.3
SNX1-212ENST00000560861 CSRNP1Q96S65 589 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 TMEM39BQ9GZU3 492 aa13.18□□□□□ -0.3
SNX1-212ENST00000560861 BAZ2BQ9UIF8 2168 aaKnown RBP13.17□□□□□ -0.3
SNX1-212ENST00000560861 GRIN3BO60391 1043 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 CAPN15O75808 1086 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 FMNL1O95466 1100 aaPredicted RBP13.17□□□□□ -0.3
SNX1-212ENST00000560861 ZSCAN22P10073 491 aaPredicted RBP13.17□□□□□ -0.3
SNX1-212ENST00000560861 TOP1P11387 765 aaKnown RBP13.17□□□□□ -0.3
SNX1-212ENST00000560861 RASA3Q14644 834 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 SLC35G1Q2M3R5 365 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 RBM26Q5T8P6 1007 aaKnown RBP13.17□□□□□ -0.3
SNX1-212ENST00000560861 LARP1BQ659C4 914 aaKnown RBP13.17□□□□□ -0.3
SNX1-212ENST00000560861 TMTC3Q6ZXV5 915 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 CLEC10AQ8IUN9 316 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 CRACR2BQ8N4Y2 399 aaPredicted RBP13.17□□□□□ -0.3
SNX1-212ENST00000560861 PNMA1Q8ND90 353 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 KAT14Q9H8E8 782 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 HACL1Q9UJ83 578 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 SCN4AP35499 1836 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 PAPPA2Q9BXP8 1791 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 CEP350Q5VT06 3117 aa13.17□□□□□ -0.3
SNX1-212ENST00000560861 WDR90Q96KV7 1748 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 CNTNAP5Q8WYK1 1306 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 CCDC196A0A1B0GTZ2 297 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 CPLX1O14810 134 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 CDKL5O76039 1030 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 PLEKHA8P1O95397 391 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 F13A1P00488 732 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 SNHG28P0DPA3 235 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 TNNI2P48788 182 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 TNFAIP1Q13829 316 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 NFKBIBQ15653 356 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 CDC37L1Q7L3B6 337 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 SIAH1Q8IUQ4 282 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 NUP133Q8WUM0 1156 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 MKL1Q969V6 931 aa13.16□□□□□ -0.3
SNX1-212ENST00000560861 RBM28Q9NW13 759 aaKnown RBP13.16□□□□□ -0.3
SNX1-212ENST00000560861 ORC3Q9UBD5 711 aaPredicted RBP13.16□□□□□ -0.3
SNX1-212ENST00000560861 SSC5DA1L4H1 1573 aa13.15□□□□□ -0.3
SNX1-212ENST00000560861 PALM3A6NDB9 673 aaPredicted RBP13.15□□□□□ -0.3
SNX1-212ENST00000560861 PPFIA3O75145 1194 aa13.15□□□□□ -0.3
SNX1-212ENST00000560861 BAG4O95429 457 aaKnown RBP13.15□□□□□ -0.3
SNX1-212ENST00000560861 CERKLQ49MI3 558 aaPredicted RBP13.15□□□□□ -0.3
SNX1-212ENST00000560861 CPLX2Q6PUV4 134 aaKnown RBP13.15□□□□□ -0.3
SNX1-212ENST00000560861 TMEM179Q6ZVK1 233 aa13.15□□□□□ -0.3
SNX1-212ENST00000560861 PHKBQ93100 1093 aa13.15□□□□□ -0.3
SNX1-212ENST00000560861 RNF26Q9BY78 433 aaPredicted RBP13.15□□□□□ -0.3
SNX1-212ENST00000560861 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.15□□□□□ -0.34e-8■■■■■ 48
SNX1-212ENST00000560861 NYAP2Q9P242 653 aa13.15□□□□□ -0.3
SNX1-212ENST00000560861 MAD2L2Q9UI95 211 aa13.15□□□□□ -0.3
SNX1-212ENST00000560861 STX8Q9UNK0 236 aa13.15□□□□□ -0.3
SNX1-212ENST00000560861 PITPNM2Q9BZ72 1349 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 DOCK1Q14185 1865 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 PHF20L1A8MW92 1017 aa13.14□□□□□ -0.31
SNX1-212ENST00000560861 UBE2Q2LH0YL09 131 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms