RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 SHROOM1Q2M3G4 852 aaPredicted RBP21.85■■□□□ 1.09
TSPAN3-208ENST00000560514 ARRDC4Q8NCT1 418 aa21.85■■□□□ 1.09
TSPAN3-208ENST00000560514 PRDM5Q9NQX1 630 aaPredicted RBP21.85■■□□□ 1.09
TSPAN3-208ENST00000560514 FLRT1Q9NZU1 646 aa21.85■■□□□ 1.09
TSPAN3-208ENST00000560514 SAP30BPQ9UHR5 308 aaKnown RBP21.85■■□□□ 1.09
TSPAN3-208ENST00000560514 GH2P01242 217 aa21.84■■□□□ 1.09
TSPAN3-208ENST00000560514 TTC39AQ5SRH9 613 aa21.84■■□□□ 1.09
TSPAN3-208ENST00000560514 SNRKQ9NRH2 765 aa21.84■■□□□ 1.09
TSPAN3-208ENST00000560514 FOCADQ5VW36 1801 aa21.84■■□□□ 1.09
TSPAN3-208ENST00000560514 KBTBD13C9JR72 458 aa21.83■■□□□ 1.09
TSPAN3-208ENST00000560514 MTX1Q13505 466 aa21.83■■□□□ 1.09
TSPAN3-208ENST00000560514 SHHQ15465 462 aa21.83■■□□□ 1.09
TSPAN3-208ENST00000560514 CCDC158Q5M9N0 1113 aa21.83■■□□□ 1.09
TSPAN3-208ENST00000560514 SEMA6BQ9H3T3 888 aa21.83■■□□□ 1.09
TSPAN3-208ENST00000560514 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.83■■□□□ 1.09
TSPAN3-208ENST00000560514 VCANP13611 3396 aa21.83■■□□□ 1.08
TSPAN3-208ENST00000560514 MYCNP04198 464 aaPredicted RBP21.82■■□□□ 1.08
TSPAN3-208ENST00000560514 CT47B1P0C2W7 299 aaPredicted RBP21.82■■□□□ 1.08
TSPAN3-208ENST00000560514 CYP2C19P33261 490 aa21.82■■□□□ 1.08
TSPAN3-208ENST00000560514 GJC2Q5T442 439 aaPredicted RBP21.82■■□□□ 1.08
TSPAN3-208ENST00000560514 POTEEQ6S8J3 1075 aa21.82■■□□□ 1.08
TSPAN3-208ENST00000560514 CATSPERGQ6ZRH7 1159 aa21.82■■□□□ 1.08
TSPAN3-208ENST00000560514 DPP9Q86TI2 863 aa21.82■■□□□ 1.08
TSPAN3-208ENST00000560514 C12orf42Q96LP6 360 aa21.82■■□□□ 1.08
TSPAN3-208ENST00000560514 LTBP2Q14767 1821 aa21.82■■□□□ 1.08
TSPAN3-208ENST00000560514 CNMDO75829 334 aa21.81■■□□□ 1.08
TSPAN3-208ENST00000560514 HOXC6P09630 235 aa21.81■■□□□ 1.08
TSPAN3-208ENST00000560514 GRB14Q14449 540 aa21.81■■□□□ 1.08
TSPAN3-208ENST00000560514 RAB3GAP1Q15042 981 aa21.81■■□□□ 1.08
TSPAN3-208ENST00000560514 SYMPKQ92797 1274 aaKnown RBP21.81■■□□□ 1.08
TSPAN3-208ENST00000560514 MYH1P12882 1939 aa21.8■■□□□ 1.08
TSPAN3-208ENST00000560514 USP5P45974 858 aa21.8■■□□□ 1.08
TSPAN3-208ENST00000560514 SLC39A5Q6ZMH5 540 aa21.8■■□□□ 1.08
TSPAN3-208ENST00000560514 NPLOC4Q8TAT6 608 aa21.8■■□□□ 1.08
TSPAN3-208ENST00000560514 MYLIPQ8WY64 445 aa21.8■■□□□ 1.08
TSPAN3-208ENST00000560514 PRDM6Q9NQX0 595 aa21.8■■□□□ 1.08
TSPAN3-208ENST00000560514 EYSQ5T1H1 3165 aa21.79■■□□□ 1.08
TSPAN3-208ENST00000560514 RLFQ13129 1914 aa21.79■■□□□ 1.08
TSPAN3-208ENST00000560514 IGSF3O75054 1194 aa21.79■■□□□ 1.08
TSPAN3-208ENST00000560514 FOSL2P15408 326 aa21.79■■□□□ 1.08
TSPAN3-208ENST00000560514 SMAD3P84022 425 aaKnown RBP21.79■■□□□ 1.08
TSPAN3-208ENST00000560514 C9orf50Q5SZB4 431 aa21.79■■□□□ 1.08
TSPAN3-208ENST00000560514 ADGRA1Q86SQ6 560 aa21.79■■□□□ 1.08
TSPAN3-208ENST00000560514 BADQ92934 168 aa21.79■■□□□ 1.08
TSPAN3-208ENST00000560514 CDCA7LQ96GN5 454 aa21.79■■□□□ 1.08
TSPAN3-208ENST00000560514 CABP5Q9NP86 173 aa21.79■■□□□ 1.08
TSPAN3-208ENST00000560514 VCAM1P19320 739 aa21.78■■□□□ 1.08
TSPAN3-208ENST00000560514 LBX2Q6XYB7 198 aa21.78■■□□□ 1.08
TSPAN3-208ENST00000560514 KIAA1683Q9H0B3 1180 aa21.78■■□□□ 1.08
TSPAN3-208ENST00000560514 BTBD7Q9P203 1132 aa21.78■■□□□ 1.08
TSPAN3-208ENST00000560514 SERPINB13Q9UIV8 391 aa21.78■■□□□ 1.08
TSPAN3-208ENST00000560514 GNAI2P04899 355 aa21.77■■□□□ 1.08
TSPAN3-208ENST00000560514 CYBAP13498 195 aa21.77■■□□□ 1.08
TSPAN3-208ENST00000560514 CYP7A1P22680 504 aa21.77■■□□□ 1.08
TSPAN3-208ENST00000560514 OS9Q13438 667 aaPredicted RBP21.77■■□□□ 1.08
TSPAN3-208ENST00000560514 ABCB5Q2M3G0 1257 aa21.77■■□□□ 1.08
TSPAN3-208ENST00000560514 TRIM60Q495X7 471 aa21.77■■□□□ 1.08
TSPAN3-208ENST00000560514 CERKLQ49MI3 558 aaPredicted RBP21.77■■□□□ 1.08
TSPAN3-208ENST00000560514 CERS3Q8IU89 383 aa21.77■■□□□ 1.08
TSPAN3-208ENST00000560514 TRPV1Q8NER1 839 aa21.77■■□□□ 1.08
TSPAN3-208ENST00000560514 SLC5A4Q9NY91 659 aa21.77■■□□□ 1.08
TSPAN3-208ENST00000560514 STRNO43815 780 aa21.76■■□□□ 1.07
TSPAN3-208ENST00000560514 CYP2E1P05181 493 aaPredicted RBP21.76■■□□□ 1.07
TSPAN3-208ENST00000560514 DYNLL1P63167 89 aaKnown RBP21.76■■□□□ 1.07
TSPAN3-208ENST00000560514 ANO1Q5XXA6 986 aa21.76■■□□□ 1.07
TSPAN3-208ENST00000560514 OLFML2BQ68BL8 750 aa21.76■■□□□ 1.07
TSPAN3-208ENST00000560514 TATDN1Q6P1N9 297 aa21.76■■□□□ 1.07
TSPAN3-208ENST00000560514 TTC6Q86TZ1 520 aa21.76■■□□□ 1.07
TSPAN3-208ENST00000560514 RPAP3Q9H6T3 665 aaPredicted RBP21.76■■□□□ 1.07
TSPAN3-208ENST00000560514 MYO5AQ9Y4I1 1855 aaKnown RBP21.76■■□□□ 1.07
TSPAN3-208ENST00000560514 SPDYE16A6NNV3 312 aaPredicted RBP21.75■■□□□ 1.07
TSPAN3-208ENST00000560514 SEPT4O43236 478 aa21.75■■□□□ 1.07
TSPAN3-208ENST00000560514 ADORA2AP29274 412 aa21.75■■□□□ 1.07
TSPAN3-208ENST00000560514 ARHGAP45Q92619 1136 aa21.75■■□□□ 1.07
TSPAN3-208ENST00000560514 DBNDD2Q9BQY9 259 aa21.75■■□□□ 1.07
TSPAN3-208ENST00000560514 TNNI3KQ59H18 835 aa21.74■■□□□ 1.07
TSPAN3-208ENST00000560514 ACER1Q8TDN7 264 aa21.74■■□□□ 1.07
TSPAN3-208ENST00000560514 EHD4Q9H223 541 aa21.74■■□□□ 1.07
TSPAN3-208ENST00000560514 TTYH1Q9H313 450 aaPredicted RBP21.74■■□□□ 1.07
TSPAN3-208ENST00000560514 GPR108Q9NPR9 543 aa21.74■■□□□ 1.07
TSPAN3-208ENST00000560514 PDLIM7Q9NR12 457 aa21.74■■□□□ 1.07
TSPAN3-208ENST00000560514 HOXC10Q9NYD6 342 aa21.74■■□□□ 1.07
TSPAN3-208ENST00000560514 FPGT-TNNI3KV9GXZ4 949 aa21.74■■□□□ 1.07
TSPAN3-208ENST00000560514 PRUNE2Q8WUY3 3088 aa21.73■■□□□ 1.07
TSPAN3-208ENST00000560514 PNMA6EA0A0J9YXQ4 647 aa21.73■■□□□ 1.07
TSPAN3-208ENST00000560514 IDH1O75874 414 aaKnown RBP21.73■■□□□ 1.07
TSPAN3-208ENST00000560514 ADCYAP1R1P41586 468 aa21.73■■□□□ 1.07
TSPAN3-208ENST00000560514 ZAP70P43403 619 aa21.73■■□□□ 1.07
TSPAN3-208ENST00000560514 FERMT2Q96AC1 680 aa21.73■■□□□ 1.07
TSPAN3-208ENST00000560514 RNPC3Q96LT9 517 aaKnown RBP21.73■■□□□ 1.07
TSPAN3-208ENST00000560514 TMEM265A0A087WTH1 108 aa21.72■■□□□ 1.07
TSPAN3-208ENST00000560514 COG2Q14746 738 aa21.72■■□□□ 1.07
TSPAN3-208ENST00000560514 SNX17Q15036 470 aa21.72■■□□□ 1.07
TSPAN3-208ENST00000560514 MIGA1Q8NAN2 632 aa21.72■■□□□ 1.07
TSPAN3-208ENST00000560514 MOV10L1Q9BXT6 1211 aaKnown RBP21.72■■□□□ 1.07
TSPAN3-208ENST00000560514 TANGO6Q9C0B7 1094 aa21.72■■□□□ 1.07
TSPAN3-208ENST00000560514 PIH1D3Q9NQM4 214 aaKnown RBP21.72■■□□□ 1.07
TSPAN3-208ENST00000560514 TACC3Q9Y6A5 838 aa21.72■■□□□ 1.07
TSPAN3-208ENST00000560514 ZNF236Q9UL36 1845 aa21.71■■□□□ 1.07
TSPAN3-208ENST00000560514 IPO8O15397 1037 aaKnown RBP21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms