RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CCDC144CPQ8IYA2 1237 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 NUP133Q8WUM0 1156 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 CEP95Q96GE4 821 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 KAT14Q9H8E8 782 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.11□□□□□ -0.31
USP3-218ENST00000560202 STX8Q9UNK0 236 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 SCAF8Q9UPN6 1271 aaKnown RBP13.11□□□□□ -0.31
USP3-218ENST00000560202 NID2Q14112 1375 aa13.11□□□□□ -0.31
USP3-218ENST00000560202 SIPA1L1O43166 1804 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 PTPDC1A2A3K4 754 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 MPHOSPH10O00566 681 aaKnown RBP13.1□□□□□ -0.31
USP3-218ENST00000560202 TBC1D12O60347 775 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 DDAH1O94760 285 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 CALM1P0DP23 149 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 CALM2P0DP24 149 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 CALM3P0DP25 149 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 TROAPQ12815 778 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 RTN1Q16799 776 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 APOBEC3FQ8IUX4 373 aaKnown RBP13.1□□□□□ -0.31
USP3-218ENST00000560202 FANCBQ8NB91 859 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 L3MBTL3Q96JM7 780 aaPredicted RBP13.1□□□□□ -0.31
USP3-218ENST00000560202 TMEM47Q9BQJ4 181 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 DEFB129Q9H1M3 183 aa13.1□□□□□ -0.31
USP3-218ENST00000560202 FAM217BQ9NTX9 383 aaPredicted RBP13.1□□□□□ -0.31
USP3-218ENST00000560202 GLTPD2A6NH11 291 aa13.09□□□□□ -0.31
USP3-218ENST00000560202 HMGN5P82970 282 aaKnown RBP13.09□□□□□ -0.31
USP3-218ENST00000560202 PKP1Q13835 747 aa13.09□□□□□ -0.31
USP3-218ENST00000560202 PPP2R5BQ15173 497 aa13.09□□□□□ -0.31
USP3-218ENST00000560202 CPLX2Q6PUV4 134 aaKnown RBP13.09□□□□□ -0.31
USP3-218ENST00000560202 PNMA1Q8ND90 353 aa13.09□□□□□ -0.31
USP3-218ENST00000560202 DDX11Q96FC9 970 aa13.09□□□□□ -0.31
USP3-218ENST00000560202 TEPSINQ96N21 525 aa13.09□□□□□ -0.31
USP3-218ENST00000560202 MTMR4Q9NYA4 1195 aa13.09□□□□□ -0.31
USP3-218ENST00000560202 GGA3Q9NZ52 723 aa13.09□□□□□ -0.31
USP3-218ENST00000560202 CCDC196A0A1B0GTZ2 297 aa13.08□□□□□ -0.31
USP3-218ENST00000560202 CDKL5O76039 1030 aa13.08□□□□□ -0.31
USP3-218ENST00000560202 TOP1P11387 765 aaKnown RBP13.08□□□□□ -0.31
USP3-218ENST00000560202 SYT1P21579 422 aa13.08□□□□□ -0.31
USP3-218ENST00000560202 MAP3K10Q02779 954 aa13.08□□□□□ -0.31
USP3-218ENST00000560202 RAB3GAP1Q15042 981 aa13.08□□□□□ -0.31
USP3-218ENST00000560202 NTRK3Q16288 839 aa13.08□□□□□ -0.31
USP3-218ENST00000560202 MIGA2Q7L4E1 593 aa13.08□□□□□ -0.31
USP3-218ENST00000560202 FAM184AQ8NB25 1140 aa13.08□□□□□ -0.31
USP3-218ENST00000560202 PPFIA3O75145 1194 aa13.08□□□□□ -0.32
USP3-218ENST00000560202 GDF11O95390 407 aa13.08□□□□□ -0.32
USP3-218ENST00000560202 RRP1BQ14684 758 aaKnown RBP13.08□□□□□ -0.32
USP3-218ENST00000560202 ABCB5Q2M3G0 1257 aa13.08□□□□□ -0.32
USP3-218ENST00000560202 PPP4R3BQ5MIZ7 849 aa13.08□□□□□ -0.32
USP3-218ENST00000560202 LARP1BQ659C4 914 aaKnown RBP13.08□□□□□ -0.32
USP3-218ENST00000560202 TMEM179Q6ZVK1 233 aa13.08□□□□□ -0.32
USP3-218ENST00000560202 ZDHHC9Q9Y397 364 aa13.08□□□□□ -0.32
USP3-218ENST00000560202 BRD1O95696 1058 aa13.07□□□□□ -0.32
USP3-218ENST00000560202 TTLL1O95922 423 aa13.07□□□□□ -0.32
USP3-218ENST00000560202 FDPSP14324 419 aaKnown RBP13.07□□□□□ -0.32
USP3-218ENST00000560202 PDCP20941 246 aa13.07□□□□□ -0.32
USP3-218ENST00000560202 SHROOM1Q2M3G4 852 aaPredicted RBP13.07□□□□□ -0.32
USP3-218ENST00000560202 CLEC10AQ8IUN9 316 aa13.07□□□□□ -0.32
USP3-218ENST00000560202 CTCFLQ8NI51 663 aaPredicted RBP13.07□□□□□ -0.32
USP3-218ENST00000560202 MAP3K14Q99558 947 aa13.07□□□□□ -0.32
USP3-218ENST00000560202 KANSL2Q9H9L4 492 aa13.07□□□□□ -0.32
USP3-218ENST00000560202 CABP5Q9NP86 173 aa13.07□□□□□ -0.32
USP3-218ENST00000560202 RBM28Q9NW13 759 aaKnown RBP13.07□□□□□ -0.32
USP3-218ENST00000560202 CLIP2Q9UDT6 1046 aa13.07□□□□□ -0.32
USP3-218ENST00000560202 KIF3AQ9Y496 699 aa13.07□□□□□ -0.32
USP3-218ENST00000560202 PITPNM2Q9BZ72 1349 aa13.07□□□□□ -0.32
USP3-218ENST00000560202 STX6O43752 255 aa13.06□□□□□ -0.32
USP3-218ENST00000560202 GH2P01242 217 aa13.06□□□□□ -0.32
USP3-218ENST00000560202 PDIA4P13667 645 aaKnown RBP13.06□□□□□ -0.32
USP3-218ENST00000560202 IFNAR1P17181 557 aa13.06□□□□□ -0.32
USP3-218ENST00000560202 GUCY1A2P33402 732 aa13.06□□□□□ -0.32
USP3-218ENST00000560202 JAG1P78504 1218 aa13.06□□□□□ -0.32
USP3-218ENST00000560202 NBPF12Q5TAG4 269 aaPredicted RBP13.06□□□□□ -0.32
USP3-218ENST00000560202 FAM43AQ8N2R8 423 aa13.06□□□□□ -0.32
USP3-218ENST00000560202 ORC3Q9UBD5 711 aaPredicted RBP13.06□□□□□ -0.32
USP3-218ENST00000560202 PPP2R3BQ9Y5P8 575 aa13.06□□□□□ -0.32
USP3-218ENST00000560202 WDR33Q9C0J8 1336 aaKnown RBP13.06□□□□□ -0.32
USP3-218ENST00000560202 KIF5BP33176 963 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 EPHX2P34913 555 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 GRM4Q14833 912 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 SEPT2Q15019 361 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 USP50Q70EL3 339 aaPredicted RBP13.05□□□□□ -0.32
USP3-218ENST00000560202 CMTR1Q8N1G2 835 aaKnown RBP13.05□□□□□ -0.32
USP3-218ENST00000560202 TNPO1Q92973 898 aaKnown RBP13.05□□□□□ -0.32
USP3-218ENST00000560202 PHKBQ93100 1093 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 NYAP2Q9P242 653 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 IQCA1LA6NCM1 817 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 PLEKHA8P1O95397 391 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 FMNL1O95466 1100 aaPredicted RBP13.05□□□□□ -0.32
USP3-218ENST00000560202 EEF2P13639 858 aaKnown RBP13.05□□□□□ -0.32
USP3-218ENST00000560202 CAP2P40123 477 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 ATP2B2Q01814 1243 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 SSRP1Q08945 709 aaKnown RBP13.05□□□□□ -0.32
USP3-218ENST00000560202 TMTC3Q6ZXV5 915 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 NBPF11Q86T75 865 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 SIAH1Q8IUQ4 282 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 LRRC47Q8N1G4 583 aaKnown RBP13.05□□□□□ -0.32
USP3-218ENST00000560202 CCDC82Q8N4S0 544 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 DCPSQ96C86 337 aaKnown RBP13.05□□□□□ -0.32
USP3-218ENST00000560202 HOOK2Q96ED9 719 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 SLC26A6Q9BXS9 759 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms