RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 OCA2Q04671 838 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 TEX12Q9BXU0 123 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 RAB20Q9NX57 234 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 ITM2BQ9Y287 266 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 PRPF38AQ8NAV1 312 aaKnown RBP15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 CDKL2Q92772 493 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 BRD3Q15059 726 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 SFMBT2Q5VUG0 894 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 KRT80Q6KB66 452 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 GPHNQ9NQX3 736 aaPredicted RBP15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 SNRKQ9NRH2 765 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 VWA3AA6NCI4 1184 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 IQCB1Q15051 598 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 ZNF449Q6P9G9 518 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 YY1AP1Q9H869 796 aa15.24■□□□□ 0.03
CSPG4P12-202ENST00000559989 PARP1P09874 1014 aaKnown RBP15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 PAK1Q13153 545 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 CDV3Q9UKY7 258 aaKnown RBP15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 ITKQ08881 620 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 RINT1Q6NUQ1 792 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 OLA1Q9NTK5 396 aaKnown RBP15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 PACSIN2Q9UNF0 486 aaPredicted RBP15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 PLIN2Q99541 437 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 SUPT6HQ7KZ85 1726 aaKnown RBP15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 SKOR1P84550 965 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 PIP4K2CQ8TBX8 421 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 CCPG1Q9ULG6 757 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 FGD6Q6ZV73 1430 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 RAPH1Q70E73 1250 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 SSH1Q8WYL5 1049 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 LRRC2Q9BYS8 371 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 WWC3Q9ULE0 1092 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 BEND3Q5T5X7 828 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 MYRIPQ8NFW9 859 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 FGD4Q96M96 766 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 SPZ1Q9BXG8 430 aa15.23■□□□□ 0.03
CSPG4P12-202ENST00000559989 M0QZ92 97 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 GNA14O95837 355 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 RBM26Q5T8P6 1007 aaKnown RBP15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 C4orf50Q6ZRC1 276 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 RNF207Q6ZRF8 634 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 ST13P4Q8IZP2 240 aaPredicted RBP15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 FBXL13Q8NEE6 735 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 SH2D4AQ9H788 454 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 MYO1AQ9UBC5 1043 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 TTI1O43156 1089 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 TRPA1O75762 1119 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 SP4Q02446 784 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 NMIQ13287 307 aaPredicted RBP15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 BBOF1Q8ND07 529 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 GOLGA5Q8TBA6 731 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 CLEC11AQ9Y240 323 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 WBP4O75554 376 aaKnown RBP15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 STAM2O75886 525 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 HADHQ16836 314 aaKnown RBP15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 ARHGAP44Q17R89 818 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 CSGALNACT2Q8N6G5 542 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 GPC4O75487 556 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 MCF2P10911 925 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 IL9RQ01113 521 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 F6X3S4 739 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 ADCY8P40145 1251 aa15.22■□□□□ 0.03
CSPG4P12-202ENST00000559989 ARHGEF35A5YM69 484 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 SERPINI1Q99574 410 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 LRPPRCP42704 1394 aaKnown RBP15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 H3BRJ5 948 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 NOP56O00567 594 aaKnown RBP15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 SPOUT1Q5T280 376 aaKnown RBP15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 DDX42Q86XP3 938 aaKnown RBP eCLIP15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 TRIM59Q8IWR1 403 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 MED10Q9BTT4 135 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 DIABLOQ9NR28 239 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 BIN2Q9UBW5 565 aaPredicted RBP15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 ATG16L1Q676U5 607 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 SFMBT1Q9UHJ3 866 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 TRPC6Q9Y210 931 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 GLT8D2Q9H1C3 349 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 HYOU1Q9Y4L1 999 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 EIF3CLB5ME19 914 aaKnown RBP15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 PPARDQ03181 441 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 PPP2R5AQ15172 486 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 SMC5Q8IY18 1101 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 TRIML1Q8N9V2 468 aa15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 EIF3CQ99613 913 aaKnown RBP15.21■□□□□ 0.03
CSPG4P12-202ENST00000559989 MRPL28Q13084 256 aaKnown RBP15.21■□□□□ 0.02
CSPG4P12-202ENST00000559989 CAPN11Q9UMQ6 739 aa15.21■□□□□ 0.02
CSPG4P12-202ENST00000559989 GUCY2FP51841 1108 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 POLE2P56282 527 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 TBCCQ15814 346 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 BZW2Q9Y6E2 419 aaKnown RBP15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 EP400NLQ6ZTU2 488 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 ZSCAN32Q9NX65 697 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 CCDC141Q6ZP82 1450 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 SPDYE2BA6NHP3 402 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 SPDYE6P0CI01 402 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 DNM2P50570 870 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 KLHL30Q0D2K2 578 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 GRM1Q13255 1194 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 SNX21Q969T3 373 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 151.1 ms