RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 HLA-DOAP06340 250 aa14.71□□□□□ -0.06
USP3-213ENST00000559711 KIF5BP33176 963 aa14.71□□□□□ -0.06
USP3-213ENST00000559711 PKN1Q16512 942 aa14.71□□□□□ -0.06
USP3-213ENST00000559711 MYSM1Q5VVJ2 828 aa14.71□□□□□ -0.06
USP3-213ENST00000559711 TMEM47Q9BQJ4 181 aa14.71□□□□□ -0.06
USP3-213ENST00000559711 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.71□□□□□ -0.06
USP3-213ENST00000559711 RTEL1Q9NZ71 1219 aa14.71□□□□□ -0.06
USP3-213ENST00000559711 FAM198AQ9UFP1 575 aa14.71□□□□□ -0.06
USP3-213ENST00000559711 ZNF646O15015 1829 aaPredicted RBP14.7□□□□□ -0.06
USP3-213ENST00000559711 CDK5RAP2Q96SN8 1893 aa14.7□□□□□ -0.06
USP3-213ENST00000559711 RAD17O75943 681 aa14.7□□□□□ -0.06
USP3-213ENST00000559711 PTGER2P43116 358 aa14.7□□□□□ -0.06
USP3-213ENST00000559711 AKAP17AQ02040 695 aaKnown RBP14.7□□□□□ -0.06
USP3-213ENST00000559711 CFAP100Q494V2 611 aa14.7□□□□□ -0.06
USP3-213ENST00000559711 GAS2L3Q86XJ1 694 aa14.7□□□□□ -0.06
USP3-213ENST00000559711 ZFPM1Q8IX07 1006 aa14.7□□□□□ -0.06
USP3-213ENST00000559711 NIM1KQ8IY84 436 aa14.7□□□□□ -0.06
USP3-213ENST00000559711 SRBD1Q8N5C6 995 aaKnown RBP14.7□□□□□ -0.06
USP3-213ENST00000559711 IGKV6D-41A0A0C4DH26 115 aa14.69□□□□□ -0.06
USP3-213ENST00000559711 MMP1P03956 469 aa14.69□□□□□ -0.06
USP3-213ENST00000559711 GNAQP50148 359 aa14.69□□□□□ -0.06
USP3-213ENST00000559711 GRM4Q14833 912 aa14.69□□□□□ -0.06
USP3-213ENST00000559711 PGBD1Q96JS3 809 aa14.69□□□□□ -0.06
USP3-213ENST00000559711 POLR3EQ9NVU0 708 aa14.69□□□□□ -0.06
USP3-213ENST00000559711 STX8Q9UNK0 236 aa14.69□□□□□ -0.06
USP3-213ENST00000559711 V9GY48 417 aaPredicted RBP14.69□□□□□ -0.06
USP3-213ENST00000559711 COL4A5P29400 1685 aa14.69□□□□□ -0.06
USP3-213ENST00000559711 FOCADQ5VW36 1801 aa14.69□□□□□ -0.06
USP3-213ENST00000559711 CNTNAP5Q8WYK1 1306 aa14.69□□□□□ -0.06
USP3-213ENST00000559711 ENTPD3O75355 529 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 TOP1P11387 765 aaKnown RBP14.68□□□□□ -0.06
USP3-213ENST00000559711 SHMT1P34896 483 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 NASPP49321 788 aaPredicted RBP14.68□□□□□ -0.06
USP3-213ENST00000559711 L1TD1Q5T7N2 865 aaKnown RBP14.68□□□□□ -0.06
USP3-213ENST00000559711 KLHL34Q8N239 644 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 AGBL3Q8NEM8 1001 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 CEP95Q96GE4 821 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 PRMT6Q96LA8 375 aaPredicted RBP14.68□□□□□ -0.06
USP3-213ENST00000559711 FTOQ9C0B1 505 aaKnown RBP eCLIP14.68□□□□□ -0.06
USP3-213ENST00000559711 TAOK3Q9H2K8 898 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 FOXP1Q9H334 677 aaPredicted RBP14.68□□□□□ -0.06
USP3-213ENST00000559711 MTMR4Q9NYA4 1195 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 MAD2L2Q9UI95 211 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 TCHHQ07283 1943 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 GOLGA6L4A6NEF3 574 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 YEATS4O95619 227 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 XBP1P17861 261 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 CACNB3P54284 484 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 SAFBQ15424 915 aaKnown RBP eCLIP14.68□□□□□ -0.06
USP3-213ENST00000559711 CCDC183Q5T5S1 534 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 SH3BP5LQ7L8J4 393 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 METTL16Q86W50 562 aaKnown RBP14.68□□□□□ -0.06
USP3-213ENST00000559711 TDRD3Q9H7E2 651 aaKnown RBP14.68□□□□□ -0.06
USP3-213ENST00000559711 PI4KBQ9UBF8 816 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 PPP1R1BQ9UD71 204 aaPredicted RBP14.68□□□□□ -0.06
USP3-213ENST00000559711 HDAC9Q9UKV0 1011 aa14.68□□□□□ -0.06
USP3-213ENST00000559711 PALM3A6NDB9 673 aaPredicted RBP14.67□□□□□ -0.06
USP3-213ENST00000559711 DDTLA6NHG4 134 aaPredicted RBP14.67□□□□□ -0.06
USP3-213ENST00000559711 SPDYE2BA6NHP3 402 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 NFKBIEO00221 500 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 SPDYE6P0CI01 402 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 AKR1B1P15121 316 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 CEBPZQ03701 1054 aaKnown RBP14.67□□□□□ -0.06
USP3-213ENST00000559711 CXCL9Q07325 125 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 POTEDQ86YR6 584 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 FOXP4Q8IVH2 680 aaPredicted RBP14.67□□□□□ -0.06
USP3-213ENST00000559711 MTMR14Q8NCE2 650 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 LINC00301Q8NCQ3 95 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 SHISA4Q96DD7 197 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 CCDC17Q96LX7 622 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 LZTS2Q9BRK4 669 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 KCNJ14Q9UNX9 436 aa14.67□□□□□ -0.06
USP3-213ENST00000559711 BTBD18B2RXH4 712 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 LETM1O95202 739 aaPredicted RBP14.66□□□□□ -0.06
USP3-213ENST00000559711 MRE11P49959 708 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 TCP10Q12799 353 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 GNL2Q13823 731 aaKnown RBP14.66□□□□□ -0.06
USP3-213ENST00000559711 LRSAM1Q6UWE0 723 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 NOSTRINQ8IVI9 506 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 DIS3L2Q8IYB7 885 aaKnown RBP14.66□□□□□ -0.06
USP3-213ENST00000559711 STAG2Q8N3U4 1231 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 OGFOD1Q8N543 542 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 PHF20Q9BVI0 1012 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 CLIC4Q9Y696 253 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 ATRNL1Q5VV63 1379 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 ADAMTSL1Q8N6G6 1762 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 LTBP3Q9NS15 1303 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 MYH1P12882 1939 aa14.66□□□□□ -0.06
USP3-213ENST00000559711 GOLGB1Q14789 3259 aaKnown RBP14.65□□□□□ -0.06
USP3-213ENST00000559711 COL2A1P02458 1487 aaPredicted RBP14.65□□□□□ -0.06
USP3-213ENST00000559711 SYCE3A1L190 88 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 PSDA5PKW4 1024 aaPredicted RBP14.65□□□□□ -0.06
USP3-213ENST00000559711 LIG1P18858 919 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 DLGAP5Q15398 846 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 PFKFB3Q16875 520 aaPredicted RBP14.65□□□□□ -0.06
USP3-213ENST00000559711 ANO1Q5XXA6 986 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 KCNG4Q8TDN1 519 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 JDP2Q8WYK2 163 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 DNAJC18Q9H819 358 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 ZBTB12Q9Y330 459 aaPredicted RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms