RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 PDE1AP54750 535 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 RAB3GAP1Q15042 981 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 FAM110CQ1W6H9 321 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 LRRFIP1Q32MZ4 808 aaKnown RBP13.15□□□□□ -0.3
SPG11-216ENST00000559347 C12orf60Q5U649 245 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 CTR9Q6PD62 1173 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 C16orf86Q6ZW13 317 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 AMOTL1Q8IY63 956 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 ARMC5Q96C12 935 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 DDRGK1Q96HY6 314 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 C12orf42Q96LP6 360 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 LNPKQ9C0E8 428 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 ASCC2Q9H1I8 757 aaPredicted RBP13.15□□□□□ -0.3
SPG11-216ENST00000559347 RWDD1Q9H446 243 aaPredicted RBP13.15□□□□□ -0.3
SPG11-216ENST00000559347 EPB41L4AQ9HCS5 686 aaPredicted RBP13.15□□□□□ -0.3
SPG11-216ENST00000559347 CABP5Q9NP86 173 aa13.15□□□□□ -0.3
SPG11-216ENST00000559347 COL11A1P12107 1806 aaPredicted RBP13.15□□□□□ -0.3
SPG11-216ENST00000559347 GSG1L2A8MUP6 293 aa13.14□□□□□ -0.31
SPG11-216ENST00000559347 IGHDP01880 384 aa13.14□□□□□ -0.31
SPG11-216ENST00000559347 OSBPP22059 807 aa13.14□□□□□ -0.31
SPG11-216ENST00000559347 HOXA7P31268 230 aaPredicted RBP13.14□□□□□ -0.31
SPG11-216ENST00000559347 PRMT2P55345 433 aa13.14□□□□□ -0.31
SPG11-216ENST00000559347 SEPT2Q15019 361 aa13.14□□□□□ -0.31
SPG11-216ENST00000559347 ZYXQ15942 572 aaKnown RBP13.14□□□□□ -0.31
SPG11-216ENST00000559347 USP17L2Q6R6M4 530 aa13.14□□□□□ -0.31
SPG11-216ENST00000559347 ANKRD13CQ8N6S4 541 aa13.14□□□□□ -0.31
SPG11-216ENST00000559347 SEC62Q99442 399 aaKnown RBP13.14□□□□□ -0.31
SPG11-216ENST00000559347 FEZ1Q99689 392 aa13.14□□□□□ -0.31
SPG11-216ENST00000559347 EMILIN3Q9NT22 766 aa13.14□□□□□ -0.31
SPG11-216ENST00000559347 SRRDQ9UH36 339 aa13.14□□□□□ -0.31
SPG11-216ENST00000559347 MYPNQ86TC9 1320 aa13.13□□□□□ -0.31
SPG11-216ENST00000559347 MPHOSPH10O00566 681 aaKnown RBP13.13□□□□□ -0.31
SPG11-216ENST00000559347 GCLCP48506 637 aaPredicted RBP13.13□□□□□ -0.31
SPG11-216ENST00000559347 USP14P54578 494 aa13.13□□□□□ -0.31
SPG11-216ENST00000559347 FCGRTP55899 365 aa13.13□□□□□ -0.31
SPG11-216ENST00000559347 IRX3P78415 501 aaPredicted RBP13.13□□□□□ -0.31
SPG11-216ENST00000559347 SLC9C1Q4G0N8 1177 aa13.13□□□□□ -0.31
SPG11-216ENST00000559347 ZMYM1Q5SVZ6 1142 aa13.13□□□□□ -0.31
SPG11-216ENST00000559347 GIMAP6Q6P9H5 292 aa13.13□□□□□ -0.31
SPG11-216ENST00000559347 TMEM179Q6ZVK1 233 aa13.13□□□□□ -0.31
SPG11-216ENST00000559347 ACER1Q8TDN7 264 aa13.13□□□□□ -0.31
SPG11-216ENST00000559347 ZNF333Q96JL9 665 aa13.13□□□□□ -0.31
SPG11-216ENST00000559347 KIAA1683Q9H0B3 1180 aa13.13□□□□□ -0.31
SPG11-216ENST00000559347 ZNF236Q9UL36 1845 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 FMNL1O95466 1100 aaPredicted RBP13.12□□□□□ -0.31
SPG11-216ENST00000559347 AKR1B1P15121 316 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 GNAT2P19087 354 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 VCAM1P19320 739 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 CDK8P49336 464 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 HERVK_113P62684 666 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 NUCB1Q02818 461 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 PRKCZQ05513 592 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 SBK1Q52WX2 424 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 B4GALNT3Q6L9W6 998 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 CHD1LQ86WJ1 897 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 CLEC10AQ8IUN9 316 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 EVI5LQ96CN4 794 aa13.12□□□□□ -0.31
SPG11-216ENST00000559347 KIAA0100Q14667 2235 aaKnown RBP13.12□□□□□ -0.31
SPG11-216ENST00000559347 A0A1W2PRG0 241 aa13.11□□□□□ -0.31
SPG11-216ENST00000559347 TNPO2O14787 897 aaKnown RBP13.11□□□□□ -0.31
SPG11-216ENST00000559347 HOXD10P28358 340 aa13.11□□□□□ -0.31
SPG11-216ENST00000559347 IRX6P78412 446 aaPredicted RBP13.11□□□□□ -0.31
SPG11-216ENST00000559347 MLLT1Q03111 559 aaPredicted RBP13.11□□□□□ -0.31
SPG11-216ENST00000559347 CCDC17Q96LX7 622 aa13.11□□□□□ -0.31
SPG11-216ENST00000559347 MORF4L1Q9UBU8 362 aa13.11□□□□□ -0.31
SPG11-216ENST00000559347 GABRQQ9UN88 632 aa13.11□□□□□ -0.31
SPG11-216ENST00000559347 FOXP2O15409 715 aa13.1□□□□□ -0.31
SPG11-216ENST00000559347 TDO2P48775 406 aa13.1□□□□□ -0.31
SPG11-216ENST00000559347 ICA1Q05084 483 aa13.1□□□□□ -0.31
SPG11-216ENST00000559347 SH3TC2Q8TF17 1288 aa13.1□□□□□ -0.31
SPG11-216ENST00000559347 P2RX7Q99572 595 aaKnown RBP13.1□□□□□ -0.31
SPG11-216ENST00000559347 TXNRD2Q9NNW7 524 aa13.1□□□□□ -0.31
SPG11-216ENST00000559347 FRMPD3Q5JV73 1810 aa13.1□□□□□ -0.31
SPG11-216ENST00000559347 POTEFA5A3E0 1075 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 USP17L15C9J2P7 530 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 PATL2C9JE40 543 aaKnown RBP13.09□□□□□ -0.31
SPG11-216ENST00000559347 USP17L13C9JLJ4 530 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 USP17L11C9JVI0 530 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 USP17L18D6R9N7 530 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 USP17L22D6RA61 530 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 USP17L17D6RBQ6 530 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 USP17L19D6RCP7 530 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 USP17L20D6RJB6 530 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 PEX10O60683 326 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 RASA1P20936 1047 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 USP17L24Q0WX57 530 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 POTEEQ6S8J3 1075 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 CCDC129Q6ZRS4 1044 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 NBPF11Q86T75 865 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 PLEKHM2Q8IWE5 1019 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 IFNL3Q8IZI9 196 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 RAET1EQ8TD07 263 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 GTF3C2Q8WUA4 911 aaPredicted RBP13.09□□□□□ -0.31
SPG11-216ENST00000559347 OSBPL3Q9H4L5 887 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 RPAP3Q9H6T3 665 aaPredicted RBP13.09□□□□□ -0.31
SPG11-216ENST00000559347 ARHGEF10LQ9HCE6 1279 aa13.09□□□□□ -0.31
SPG11-216ENST00000559347 PLIN4Q96Q06 1357 aa13.08□□□□□ -0.31
SPG11-216ENST00000559347 A0A0D9SFI3 127 aa13.08□□□□□ -0.32
SPG11-216ENST00000559347 MINDY4BA8MYZ0 360 aa13.08□□□□□ -0.32
SPG11-216ENST00000559347 APPP05067 770 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms